Clone FMO09240 Report

Search the DGRC for FMO09240

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:92
Well:40
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG30001-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09240.5prime Sequence

1093 bp (936 high quality bases) assembled on 2010-09-13

> FMO09240.5prime
CAGTCGACATGGAATATGTGCAGGAAAATAGAGGATTTACCAATATCGGC
AATAGCTTTGGCTTCGTATGCAGAATTATAGAAAAGCAATGCGGAATTCA
ACAATTGGGAGCTCTTGAAAAATACGAATTTGCCGAGCTACTGAAGATTC
TGAATGGCACAGAAAAGTTTCTGGCCTCCAAGTTCTTCTGCCAACTGCCA
GCGAATGTCGGCAGTTTTCGAGTTCTCCGACAGCTACAGGAACTTCGCAT
CCTGACGGCCACGCAGTACATCTTTAGCAAGGAGGACTCCGATCAACTGC
AGGTGGACCTGATCATATTCCTGGAATCTGAGTTCAAACTTCTCGCAAAT
GTTTTCTTTTCGCGGCTTACGATGCTGAATCTGCGTTGAAGCTAACCTTG
ATACTGACAAGCGCTTTGGGGAATCTCTATTCCGGCCTCGTTGGCAATCC
CAAGATATGCAGCTTGGCATATGTGGAGTTCTTGTGCAAAACCCTGCCAG
ATGAAGCGCTAAATGTTTGCATGAACATGCATTTAAGTACCCTGTTGGAT
CTTCACCGATCGGAGAATGTAGACGAGGCATTCGCCAGCTTTAGCGCCTG
GATAAATGAGGGCGTCGACGAACTAACCTTTGTAAAGCACCTTTGCGATA
AGATGTTTGCTAGCCATCAGCAGGCAGCCCTTCAATATCTATTCAAACAG
TCAAACACGGAAAACTTTAATCAGTGGAAGTTCTATCTAATACTTGTGCA
AACTATCGCAAGCGCAGCCATCCTGAAACCACCGCATACATTAAAAAGTA
TCTGAAAAATAGACTTCTGCAACTGCATCCACGGCTTCCCTGGGATCCTT
GCTTCATTTGCTGCTGACTGCAAGGCTGCTTGTGCCTCAACCATGGATGT
TCGTGCTATCTAGACAACTTATAGCGTAGTGGACAAGACAACATTGTGAA
ATGACGTACTATTGGGCCACGGAAAGTTCAACATCCTTAAGTCTTTGGAG
GAGCCTTACCATACGAAAAATGCATACTGGTAATTCTGTGTCAATTGCCC
ATTCACCTGGCGGGGCGCTGATTCAGGCTTCAAACTATTGCAA

FMO09240.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG30001-RA 1327 CG30001-RA 75..1162 9..1078 4645 96.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9821947..9822101 652..498 775 100 Minus
2R 25286936 2R 9821746..9821892 796..651 685 99.3 Minus
2R 25286936 2R 9822155..9822284 500..371 650 100 Minus
2R 25286936 2R 9822505..9822616 277..166 560 100 Minus
2R 25286936 2R 9821562..9821687 919..797 480 97.6 Minus
2R 25286936 2R 9822664..9822756 167..75 465 100 Minus
2R 25286936 2R 9822347..9822443 371..276 420 97.9 Minus
2R 25286936 2R 9822816..9822881 74..9 330 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:33:35 has no hits.

FMO09240.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:58 Download gff for FMO09240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30001-RA 154..1233 9..1070 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:28 Download gff for FMO09240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30001-RA 75..1154 9..1070 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:09 Download gff for FMO09240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30001-RA 75..1154 9..1070 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:09 Download gff for FMO09240.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9821746..9821890 653..796 99 <- Minus
2R 9821947..9822098 501..652 100 <- Minus
2R 9822155..9822283 372..500 100 <- Minus
2R 9822347..9822441 278..371 97 <- Minus
2R 9822505..9822614 168..277 100 <- Minus
2R 9822664..9822756 75..167 100 <- Minus
2R 9822816..9822881 9..74 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:28 Download gff for FMO09240.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5709251..5709395 653..796 99 <- Minus
arm_2R 5709452..5709603 501..652 100 <- Minus
arm_2R 5709660..5709788 372..500 100 <- Minus
arm_2R 5709852..5709946 278..371 97 <- Minus
arm_2R 5710010..5710119 168..277 100 <- Minus
arm_2R 5710169..5710261 75..167 100 <- Minus
arm_2R 5710321..5710386 9..74 100   Minus