FMO09240.5prime Sequence
1093 bp (936 high quality bases) assembled on 2010-09-13
> FMO09240.5prime
CAGTCGACATGGAATATGTGCAGGAAAATAGAGGATTTACCAATATCGGC
AATAGCTTTGGCTTCGTATGCAGAATTATAGAAAAGCAATGCGGAATTCA
ACAATTGGGAGCTCTTGAAAAATACGAATTTGCCGAGCTACTGAAGATTC
TGAATGGCACAGAAAAGTTTCTGGCCTCCAAGTTCTTCTGCCAACTGCCA
GCGAATGTCGGCAGTTTTCGAGTTCTCCGACAGCTACAGGAACTTCGCAT
CCTGACGGCCACGCAGTACATCTTTAGCAAGGAGGACTCCGATCAACTGC
AGGTGGACCTGATCATATTCCTGGAATCTGAGTTCAAACTTCTCGCAAAT
GTTTTCTTTTCGCGGCTTACGATGCTGAATCTGCGTTGAAGCTAACCTTG
ATACTGACAAGCGCTTTGGGGAATCTCTATTCCGGCCTCGTTGGCAATCC
CAAGATATGCAGCTTGGCATATGTGGAGTTCTTGTGCAAAACCCTGCCAG
ATGAAGCGCTAAATGTTTGCATGAACATGCATTTAAGTACCCTGTTGGAT
CTTCACCGATCGGAGAATGTAGACGAGGCATTCGCCAGCTTTAGCGCCTG
GATAAATGAGGGCGTCGACGAACTAACCTTTGTAAAGCACCTTTGCGATA
AGATGTTTGCTAGCCATCAGCAGGCAGCCCTTCAATATCTATTCAAACAG
TCAAACACGGAAAACTTTAATCAGTGGAAGTTCTATCTAATACTTGTGCA
AACTATCGCAAGCGCAGCCATCCTGAAACCACCGCATACATTAAAAAGTA
TCTGAAAAATAGACTTCTGCAACTGCATCCACGGCTTCCCTGGGATCCTT
GCTTCATTTGCTGCTGACTGCAAGGCTGCTTGTGCCTCAACCATGGATGT
TCGTGCTATCTAGACAACTTATAGCGTAGTGGACAAGACAACATTGTGAA
ATGACGTACTATTGGGCCACGGAAAGTTCAACATCCTTAAGTCTTTGGAG
GAGCCTTACCATACGAAAAATGCATACTGGTAATTCTGTGTCAATTGCCC
ATTCACCTGGCGGGGCGCTGATTCAGGCTTCAAACTATTGCAA
FMO09240.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30001-RA | 1327 | CG30001-RA | 75..1162 | 9..1078 | 4645 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9821947..9822101 | 652..498 | 775 | 100 | Minus |
2R | 25286936 | 2R | 9821746..9821892 | 796..651 | 685 | 99.3 | Minus |
2R | 25286936 | 2R | 9822155..9822284 | 500..371 | 650 | 100 | Minus |
2R | 25286936 | 2R | 9822505..9822616 | 277..166 | 560 | 100 | Minus |
2R | 25286936 | 2R | 9821562..9821687 | 919..797 | 480 | 97.6 | Minus |
2R | 25286936 | 2R | 9822664..9822756 | 167..75 | 465 | 100 | Minus |
2R | 25286936 | 2R | 9822347..9822443 | 371..276 | 420 | 97.9 | Minus |
2R | 25286936 | 2R | 9822816..9822881 | 74..9 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:33:35 has no hits.
FMO09240.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:58 Download gff for
FMO09240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30001-RA | 154..1233 | 9..1070 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:28 Download gff for
FMO09240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30001-RA | 75..1154 | 9..1070 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:09 Download gff for
FMO09240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30001-RA | 75..1154 | 9..1070 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:09 Download gff for
FMO09240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9821746..9821890 | 653..796 | 99 | <- | Minus |
2R | 9821947..9822098 | 501..652 | 100 | <- | Minus |
2R | 9822155..9822283 | 372..500 | 100 | <- | Minus |
2R | 9822347..9822441 | 278..371 | 97 | <- | Minus |
2R | 9822505..9822614 | 168..277 | 100 | <- | Minus |
2R | 9822664..9822756 | 75..167 | 100 | <- | Minus |
2R | 9822816..9822881 | 9..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:28 Download gff for
FMO09240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5709251..5709395 | 653..796 | 99 | <- | Minus |
arm_2R | 5709452..5709603 | 501..652 | 100 | <- | Minus |
arm_2R | 5709660..5709788 | 372..500 | 100 | <- | Minus |
arm_2R | 5709852..5709946 | 278..371 | 97 | <- | Minus |
arm_2R | 5710010..5710119 | 168..277 | 100 | <- | Minus |
arm_2R | 5710169..5710261 | 75..167 | 100 | <- | Minus |
arm_2R | 5710321..5710386 | 9..74 | 100 | | Minus |