FMO09242.5prime Sequence
485 bp (485 high quality bases) assembled on 2010-09-13
> FMO09242.5prime
CAGTCGACATGGCCGATGGAGAATACGACAAGGAACAATTGAGAATCCTT
AGGAACGCCTTCAAGGCTTTCGACCACGACGGTGCAGGATCGATCGAACA
TGCTGATGTATCTAGCATTCTTGAAATTTTGGGTCAGAAATTAGAACCAC
CTGCGGTAAAGGCCCTTATTAAAGAGGTCGATAAAGGAACAACTGGTAAA
TTGGATTTTAGCCAGTTCTGCAAACTGGCAGCTCGCTTTATTGAAGTTGA
GGAAGATGTGGGAGCTCTTCAAAATGAGTTAAAAGAGGCCTTCCGTGTAT
ATGATAAAGAGGGGAAAGGATACCTGACAGTTGCAACACTAAGAGGCATT
CTTCACGAATTGGACGATAAGCTTTCTAACCAAGACTTAGATATGATTAT
AGAAGAAATTGATGCGGATGGATCCGGTACGGTTGATTTTGACTTTTTTA
TGCAAGTTATGACAGGTGCAAGCTTTCTAGACCAT
FMO09242.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TpnC4-RB | 746 | CG12408-RB | 78..536 | 9..467 | 2235 | 99.1 | Plus |
| TpnC4-RA | 849 | CG12408-RA | 181..639 | 9..467 | 2235 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:33:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5506314..5506711 | 443..46 | 1990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:33:30 has no hits.
FMO09242.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:55 Download gff for
FMO09242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC4-RA | 181..639 | 9..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:26 Download gff for
FMO09242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC4-RA | 181..639 | 9..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:08 Download gff for
FMO09242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC4-RA | 181..639 | 9..467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:08 Download gff for
FMO09242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5506313..5506711 | 46..444 | 99 | <- | Minus |
| 2R | 5506761..5506797 | 8..45 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:26 Download gff for
FMO09242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1393818..1394216 | 46..444 | 99 | <- | Minus |
| arm_2R | 1394266..1394302 | 8..45 | 97 | | Minus |
