FMO09249.5prime Sequence
1133 bp (955 high quality bases) assembled on 2010-09-13
> FMO09249.5prime
CAGTCGACATGTCCACCGGCCGCCGTTTGGCCAAGCGCTCCATCATCGGC
ACCAAGGTGTGCGCCAAGGGTCCGGATGGCCTCTGGTACTCCGGCACCAT
ATCCGACGTGAAAACGCCGCCCTCGTACAGCGGACCGCTCTCGCCGCCGC
CGCCGCCCACTTTTGTGGTGCCCGGCGAGGCACCGATTAATGCCGATACG
CGCTACCTGGTCCGTTTCGATTTCAAGACCGCCGTCGAGTCCCCAACCGC
TACCACGTCGTCCGCGGCCTCGACCTCGTCCACATCCTCCACAGATCCGT
CGGTCATCGTGGAAACGCGTCGCGCTGCCAACGTACACATCAGTCCCGCT
CAGGCACTGCGTCGCAGCGCCATGATCAAGGATTTCCGCGAGTCGGATCT
TATTGGACCCGGATTCCGGTCCATCATGGACACCGAACTGCAGCCTGGTT
TTTCGGGTCTACTTCACCTACAATGGACGCGAGCAGAGCGGCGATGTCGT
CAAACACGACGCTACCAAGGATGAGGTGATTGTCAAGATCACAACAGTTG
GAAATGAGGAACCCATTGAGCTGAAGAAGCGACTGGAGGAAGTGCGTCTG
CTGGAATCGCGACGCTCCGCCCGTCTGGCAGACCAGGATCGCGACACGGA
CTTTGCCAGACTCGCCGACATGAGTGGCGAACGCCGCAGAACCACCACAC
ACAGTATTGAGGTGCCATCGCAGCTGACGGCGCAGCACAATTCCCGGGAA
ACGTCCGCCCAGCGATCACCAGGACTACGGCAACTATCTGGAACATGCCG
TGCAGCCGAGATTCTGTCATCGATGAAGTTGCAGAGTCCGCATGGCTCAA
TGGCCCGACCAGTGCTCGAGTCCCGGCAGCAGCTCTTCGGCTTCCTGGAG
CTCCGGTTCCCCGTCGGCCGCCATTGAGTGACGACGGCCACGCCCACCAC
AGCCCACACAATATCATGTCGCCCACCGATGCCGGACAACGCCACGCCCA
CGCACAGCATCCGTGTTCTCACGTCGGACGAAGGGCATTGTTCATCCAAC
TACCAGAAGGAGCGCAAGAAAAAGGGTGGAGGAATTTCCTCGCCTTTGGA
CAGGGGACAGCCTTCTTAGAACAATTCATTTGG
FMO09249.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Glut4EF-RD | 4787 | CG34360-RD | 995..2076 | 9..1104 | 4875 | 97.3 | Plus |
| Glut4EF-RH | 10796 | CG34360-RH | 995..2050 | 9..1074 | 4840 | 97.7 | Plus |
| Glut4EF-RG | 4308 | CG34360-RG | 995..2050 | 9..1074 | 4840 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9875675..9876224 | 9..559 | 2630 | 98.9 | Plus |
| 3R | 32079331 | 3R | 9930362..9930545 | 557..740 | 920 | 100 | Plus |
| 3R | 32079331 | 3R | 9943683..9943895 | 855..1075 | 620 | 92.8 | Plus |
| 3R | 32079331 | 3R | 9943486..9943587 | 747..847 | 445 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:33:16 has no hits.
FMO09249.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:52 Download gff for
FMO09249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34360-RD | 995..2076 | 9..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:19 Download gff for
FMO09249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glut4EF-RD | 995..2076 | 9..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:59 Download gff for
FMO09249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glut4EF-RD | 995..2076 | 9..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:59 Download gff for
FMO09249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9875675..9876223 | 9..558 | 98 | -> | Plus |
| 3R | 9930364..9930545 | 559..740 | 100 | -> | Plus |
| 3R | 9943481..9943587 | 741..847 | 97 | -> | Plus |
| 3R | 9943677..9943904 | 848..1086 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:19 Download gff for
FMO09249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5769203..5769309 | 741..847 | 97 | -> | Plus |
| arm_3R | 5701397..5701945 | 9..558 | 98 | -> | Plus |
| arm_3R | 5756086..5756267 | 559..740 | 100 | -> | Plus |
| arm_3R | 5769399..5769626 | 848..1086 | 91 | | Plus |
