FMO09250.5prime Sequence
1122 bp (1011 high quality bases) assembled on 2010-09-13
> FMO09250.5prime
CAGTCGACATGAGTAGTCAACCTGCCAGCCAGCCCGATAGCATCGATTTA
GCCTATGATATGTGGGCGGGCCAATTCGAATTCGTAGGACCCACAAATCA
GCAGAGCAACAAAAACAGCAACAACAACAACAACAATAGCAATTTGAACA
ACAACAAGTGCAGAATCGGAGCGCAACAAAACCGAAAACTATCTACGGAT
AGTCTGGAGGATCTGAATTTGAGTTTTAACACAAGTGCCTCGCAAAATCC
GCTAAGCAACGCCTACAGTTTGGGAGTCACTGGCGGTGCTGGAAGTGACT
ACTGTGGCTTTGGAAAACACCCGCCAATATTGATCGATCAGGAGACGTTT
CTCAGCCTCAATCCAGCGGACTTTGAGGACATTGTGCCATCCAATTCGGA
GCCCAATTCGCTGGTTTTCATCGAAAACAAGCTGGAGACTAACAACAATA
GCCTCGAATCGAACAACAATCATATAAACAATAATAATAACAATAAAATC
TACAATTTGGAGAACCTGACAAGTAAATTCAATAATAAAACGAATAATAC
GAATACAAACGGTTTCAAATTGGAGAACCTAAAGAATTTCAAGAACAAAC
TACTCTGTGATTTCGAGGATACCAATAGCGGGGGAGGAGGAGGTGGTGGC
AGTGGCGGATCAGGACCTGTTGGCATGATGAACGGCGCCCTCAGCGCAGA
GATTTGCGATAATCTCAATGAGCAACTGGAACTGCTGCAGCGCAAGGTGG
ACGATCTGTCAGATACACAGAATATAGCTGAGGATCGGACAACCCGCACC
AAGACCGAATATGCAGTCCTTCAGGCGCGTTATCACATGCTCGAAGAGCA
GTACCGAGAGTCGGACTGCGTGCCGAGGAGCGTTTGGCAGAGGAGCAGAG
CGGCACCGCGAGATTTTGGCCCGCGTGGAGCGGGGAAGCTCCCTGCAGAA
CGAGAACTGCCAGAATGAAGAATCCGTGCCACCGAAGATCGAGGCAACGG
CACTGGCGGGAAGGAGCGCCCGACTGCGTGTCCTGGTGTGACAAGCAGCC
ATTGACTTCCATCGCACGAAGAACAGTTGGGAGCCTGGGCGCGCGAACAA
TCGCGTCCTGCACATGGTACGA
FMO09250.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-RK | 3138 | CG33991-RK | 317..1420 | 8..1112 | 5035 | 97.8 | Plus |
| nuf-RJ | 3272 | CG33991-RJ | 451..1554 | 8..1112 | 5035 | 97.8 | Plus |
| nuf-RF | 3099 | CG33991-RF | 317..1420 | 8..1112 | 5035 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14225686..14226403 | 8..725 | 3590 | 100 | Plus |
| 3L | 28110227 | 3L | 14230176..14230310 | 726..860 | 675 | 100 | Plus |
| 3L | 28110227 | 3L | 14230661..14230875 | 865..1080 | 515 | 91.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:33:12 has no hits.
FMO09250.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:51 Download gff for
FMO09250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RF | 307..1408 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:17 Download gff for
FMO09250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RF | 309..1410 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:57 Download gff for
FMO09250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RF | 309..1410 | 1..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:57 Download gff for
FMO09250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14225678..14226403 | 1..725 | 99 | -> | Plus |
| 3L | 14230176..14230310 | 726..860 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:17 Download gff for
FMO09250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14218778..14219503 | 1..725 | 99 | -> | Plus |
| arm_3L | 14223276..14223410 | 726..860 | 100 | -> | Plus |
