FMO09252.5prime Sequence
1117 bp (991 high quality bases) assembled on 2010-09-13
> FMO09252.5prime
CAGTCGACATGACAACACGCACGGTGCAGAGAAATCTGTGGGCCTCCGCT
GCGGTGGTCCTAGTTCTGCTCCTGCTCTGGACGGACACCACTGGAGGCTA
TTTTGCAGCCATCGATGAGACGGAGACTAGCAAAAACTGCTTCTGCGAGT
TGGAGGGATCTATAAACGACTGCAGCTGCGATGTGGACACGGTGGATCAC
TTTAACAACATGAAAATCTATCCGCGATTGCAGAGTCTGCTGGTGAAGAA
CTTCTTCCGCTTCTACAAGGTGAACCTGCGGCAGGAGTGCCCCTTCTGGC
CGGATGACAGTCGCTGTGCGATGCGCTTCTGCCAGGTGGAGAACTGCGAG
GAGCAAGCGATTCCCCAGGGCATCAAGGACAAGGGAGAGCACAAGGAGAA
GGCCGCGTTTAAATACACGCGCGAGGCGCAAGTTGGGGGCTCAGCGTGTT
CGGATGGAGAGGATTTCGACAGCTCTCTGGGTTTCCTGGACACGAGCATA
AGTGATCAGGCGCATCGGGAATTCGAACTGTGGGCGAAGCATGATGAGGC
GGAAGAGGACTTTTGCATCGTGGACGATCATGAGGAGGGATCCCAGTATG
TGGATCTGCTCCTAAATCCTGAGCGGTACACCGGCTATAAGGGCGAATCG
GCACATCGCATCTGGAAGAGCATCTATCTGGAGAACTGCTTCGGTGGCAA
CAACGAGACGGCTAACAAGTTCTCTAACTACGTGCCTCATTTGGATTTGC
GAAATGTGTGCTTGGAGCAGCGTGCCTTTTATCGCATTATTTCTGGCCTG
CACTCTAGTATCAACATTCATCTGTGCTCCAAATACCTGCTGTCAGAGTC
AAAGGACTTCTTAGATCCGCAGGCATCTGGGGTCCCAACGTAAGGAGTTT
AAACGACGCTTTAGTCCAGAAACCACAAGCGTGAAAGTCCGCCACTGGCT
GCGAAACCTCTACTTCATCTATTCTGATAGAACTGCGCCGCCCTAGCTCT
TAGGCTTGCCTCCTTATCTGCGGGCGAGAAGAATTACTAACACGGGCATC
GCGAGAGAATGAAGAAGTTAACCTAGCCATCAATGATAGTTTGAGTGTCT
AGAAAATTTTCAATTCC
FMO09252.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ero1L-RB | 2100 | CG1333-RB | 249..1350 | 9..1114 | 5005 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4172225..4172800 | 414..988 | 2615 | 98.1 | Plus |
| 3L | 28110227 | 3L | 4171212..4171477 | 148..413 | 1330 | 100 | Plus |
| 3L | 28110227 | 3L | 4170652..4170796 | 9..153 | 710 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:33:05 has no hits.
FMO09252.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:49 Download gff for
FMO09252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ero1L-RB | 383..1490 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:12 Download gff for
FMO09252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ero1L-RB | 245..1352 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:54 Download gff for
FMO09252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ero1L-RB | 245..1352 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:54 Download gff for
FMO09252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4170648..4170792 | 1..149 | 97 | -> | Plus |
| 3L | 4172225..4172910 | 414..1103 | 96 | | Plus |
| 3L | 4171214..4171477 | 150..413 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:12 Download gff for
FMO09252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4170648..4170792 | 1..149 | 97 | -> | Plus |
| arm_3L | 4171214..4171477 | 150..413 | 100 | -> | Plus |
| arm_3L | 4172225..4172910 | 414..1103 | 96 | | Plus |
