FMO09255.5prime Sequence
1006 bp (909 high quality bases) assembled on 2010-09-13
> FMO09255.5prime
CAGTCGACATGGCCACCAACCTGCAAAAGGCCACCCTTGAGGAAATTCGA
CATGCGGCCGCGCGTATTTGCCGAGACTATCTAACTGGGCCCTGGAAAGT
GGTTACTCCGGAGAGTTTGGTAGTGAAGCGCATAAGTGGCGGGCTGTCAA
ATTTCTTGTATTACGTAAGCCTTCCCGATTTAAATGACTTCGATGAGCTG
GACGAACAGAAACAGCAGCAGGAAGACATCATAGGGGCCACCGCAACTGT
GACCAATAGAAGCGGAGTTTTCATACACGACGATGAGTCGGCTGCCAAGG
CGGTGGGCGTAACATTGATGGCGAGGGAATTAATAAATAACGATGACGTC
GCCGACGCAGCTCCTGGCGCCACACAAGCACACAAACGTCAGCGATGCGA
TAGTAATAGTCGCGAATGCAGTTCTTCGAAACGATTGCACGCCCCCAAGC
ATCAACCCCGTGAGGTCCTTCTGCGAATATATGGTCAGACCCATGGTGAT
CACGCCCTGGAGAGCATGATTACCGAGTCCGTGGTTTTCGCCCTTCTCAG
TGAACGGAACTATGGGCCCAAACTGCACGGAATCTTTCCGGGCGGACGTA
TTGAACAATATATTCCGGCACGCGCTTTGACCACAGCAGAATTGGGAGAG
CAACGAATATTAAAGAGAGTGGCTGAGAAATGGGTGAGATCCACAGTCTT
AATATACCCATGTCTAAGGAGCCCGATTGGATTTGGAATTGTATGCAGCG
TTGGGTTTCCGGGTTAGAGAGCATTGTTAACGGCAGTGTCCAAACGAATC
AAAAATCTTCGGTACTGAAGAAGCAAATGGAATTGATGCGGACCTTTGAC
TACGTTCAAGAGATGGCCTGATTAGGTCGATTATCGATGAAGGAGTTATC
CAGTAGTGTTCTGTCATTATGATCTGCAGAAGTAATATTCTTGATGCGAA
CAACGTCAGCTGGTCAAACGACGGAACCCCCGGGGAAGTCAATCTGTAGC
CTGGAG
FMO09255.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2201-RG | 2463 | CG2201-RG | 695..1693 | 9..1003 | 4620 | 98.1 | Plus |
| CG2201-RA | 2010 | CG2201-RA | 242..1240 | 9..1003 | 4620 | 98.1 | Plus |
| CG2201-RF | 2561 | CG2201-RF | 280..1257 | 30..1003 | 4515 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21617492..21617823 | 466..135 | 1630 | 99.4 | Minus |
| 2L | 23513712 | 2L | 21616184..21616574 | 1003..617 | 1405 | 94.7 | Minus |
| 2L | 23513712 | 2L | 21617279..21617434 | 618..463 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 21618004..21618112 | 136..28 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:32:58 has no hits.
FMO09255.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:47 Download gff for
FMO09255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RA | 207..1203 | 1..994 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:09 Download gff for
FMO09255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RA | 235..1231 | 1..994 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:52 Download gff for
FMO09255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RA | 235..1231 | 1..994 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:52 Download gff for
FMO09255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21616182..21616573 | 618..1006 | 95 | <- | Minus |
| 2L | 21617280..21617432 | 465..617 | 100 | <- | Minus |
| 2L | 21617494..21617821 | 137..464 | 99 | <- | Minus |
| 2L | 21618004..21618110 | 30..136 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:09 Download gff for
FMO09255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21616182..21616573 | 618..1006 | 95 | <- | Minus |
| arm_2L | 21617280..21617432 | 465..617 | 100 | <- | Minus |
| arm_2L | 21617494..21617821 | 137..464 | 99 | <- | Minus |
| arm_2L | 21618004..21618110 | 30..136 | 100 | <- | Minus |
