FMO09256.5prime Sequence
1093 bp (979 high quality bases) assembled on 2010-09-13
> FMO09256.5prime
CAGTCGACATGCCTAAGTCGGGTCGCGACGGAGGAGCATCCAAGGACTCC
AAATACGATCTAAGCAAAATCTCAGCTCGCGTGGATCGCGTGAACGTCAG
CGGATTGCTGCGCACCCACAACGACTATGTGATGAGGGCGGCAGATGGCC
TGTTTAAGGCCAGTAACTTCCAGGATCTAATGCTGGAGGCCATGTCCACC
AAATCATATCTGCACGAGCTAGGCATCTTCAAGGATGTGAGCGTGCACAT
CGATGTTAGCCGTGGAGCGGATGCCTCGCCACAGGGATACGAGGTTACCT
TCAAGGGCAACGAAATGTCGCGCATGATGGGTTCGGCGGGCACCGAGATT
GGCCAGAACGAGGGCTCCCTGCGAACGGAGTTGACTATCCCCAATATTCT
GGGACGTGGCGAGAACATCTCACTGCAGGGCAGCTATAGCAGCACCTTGG
CCAATGATCTACAACTGAAGTTCTGGAAACCCTTCTTCCACACACGCTTC
AAGGAAAATCGGCCTGAAATGTCTTTCAGCATTTTTAGGCAAACCGATCG
GTTTGACATAAGTTCATTTCAAACCACCAACATAGGCTATTTGGTGGACT
TCTCGGCGCATACGATGGTTGGAGTGGATTTGACGCACTCGCTGCAGTAT
GAGAACGCCATCAGAGACGTGGGATTGCTAAACAAATCAGTGCCCTTCGC
CATACGCGATCATTGTGGCCCCAAATTGGCCTCTTTGCTGCGCTACTCCG
TGGTCTACGACAATCGGGATGGAAACGTATTCCCCACACGCGGTATTTAC
CTTAAATCAGTTAACGAATACTGCGGATTGGGCGGTAATGTCGCCTACAC
CAGCAGCACTGCCCACGGAGAGTTGAATGTGCCACTGTTTGCCGGTTTGG
TGGCCCAGTTTTGCGCTCGCGTTGGCGTCGTTAAGAAGACTAAAAATACC
ACCCAGCTGCCTATTAGCTCCGCTATTTTACTGGTGGTGTCCATTGAACA
CTGGAAGGATTAAATTTGGAGGAGCTGGTCCAGTAGTTGAAAGCACCGCA
ATTGGAGCACAGTCTTTCCTGGTGCCCGGCGCCTCACTGTGGT
FMO09256.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:32:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7639-RB | 1834 | CG7639-RB | 231..1299 | 9..1079 | 5080 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:32:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14988935..14989443 | 517..9 | 2515 | 99.6 | Minus |
| 2R | 25286936 | 2R | 14988264..14988701 | 1068..630 | 1900 | 97 | Minus |
| 2R | 25286936 | 2R | 14988762..14988873 | 629..518 | 560 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:32:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader2 | 5124 | invader2 INVADER2 5124bp | 24..58 | 556..590 | 112 | 80 | Plus |
| invader2 | 5124 | invader2 INVADER2 5124bp | 4882..4916 | 556..590 | 112 | 80 | Plus |
FMO09256.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:47 Download gff for
FMO09256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7639-RB | 217..1306 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:06 Download gff for
FMO09256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7639-RB | 224..1313 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:51 Download gff for
FMO09256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7639-RB | 224..1313 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:51 Download gff for
FMO09256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14988240..14988701 | 630..1092 | 96 | <- | Minus |
| 2R | 14988762..14988873 | 518..629 | 100 | <- | Minus |
| 2R | 14988935..14989449 | 1..517 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:06 Download gff for
FMO09256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10875745..10876206 | 630..1092 | 96 | <- | Minus |
| arm_2R | 10876267..10876378 | 518..629 | 100 | <- | Minus |
| arm_2R | 10876440..10876954 | 1..517 | 98 | | Minus |
