FMO09257.5prime Sequence
1100 bp (973 high quality bases) assembled on 2010-09-13
> FMO09257.5prime
CAGTCGACATGTCGTCCTCTTTCTTCCTCAAGCCAGGCGCCAAGGGCACC
AAGAAGCGCAAGAATCCCGCAGCAACAACAAAAGGAAAACCGCTTAAGAA
AGGCGGAAAACCGGGTAAATCAACGCCCGCGGCTGGTGGACCAGTGCCAA
AGAAGCAGCGCCGTCCCAAGGAGGAGGACGAGGAGATAGCTAGCGACGAT
GAGGAGTACAACAGCGATCTGGGCGGCGATGACAACACCTTGGCATTTTC
ATCCGACGAGGGCGAGGAGGAAACGCCGCAGGACAAGCGCCTGCGTCTGG
CCAAACAGTATCTGTCGGAGATCGAGAAGCAAGAGGCGGAACGCGCCGAG
GATCGGGAGCTGGCCCAAAGCGTGGAGCAGCGCTTGCAAACGGAATACTT
GGATAGCGTGGGCAAACTGCGCCGGAACATTGCTGGCAGCCTGAAAGCCT
GCGAATCGAGCCGCATCCTCAAGCACAAACTCCACCACACGCCTATCTGT
GCCCTTGCACTCAGTCCGGATGGTAAATTCCTCTACACGGGAGCCAAATC
GCAATTCCTACTTAAGTGGTGCACGGAAACGGGGAAGGTGCTGGAGAAAT
CGGACGTGCTGTCGCATCGCGAGGAACCAGAAACGGGCAAGAAAAGGCGA
TCGCATGTCATCAGCATATGCCTGTCCTCGGACATGAAGTATCTGGCCTT
GGCCGAAGGTGGTCCACACATTCAAATTTGGTGTCCCCAGACGATGAAGC
ACATTAAGACTCTTAAAGGCCACCGGGATAGTGTGGCAAGTCTGGTCTTT
CGCAAAGGCACACATGACTTGTACTCGGCAGCCAAGGATCGATCGGTGAC
ATCTGGTCCCTGGATGAGATGGCCTATGTGGAGAGTTTATTCGGTCACCA
AACGGCAGTACTAGCATAGATGCCACTGAGTCGAGAGCGCGCCATTACCG
CTGGCGGTTCGGATTGCCTCCTTGCCATTGAGATCCCAGAAGGAATCGCA
CCTGATCCTACATGGACACAAGATAGCATGGATGGCGTAAGTACAATCAA
CGATGACCATTTTGTGTCTGTGCATGGCATGAGCATCGGTATGGACGCTT
FMO09257.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:32:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U3-55K-RA | 1690 | CG33505-RA | 120..1185 | 9..1070 | 4895 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14859709..14860537 | 888..61 | 4065 | 99.6 | Minus |
| 2R | 25286936 | 2R | 14859463..14859647 | 1070..889 | 310 | 84 | Minus |
| 2R | 25286936 | 2R | 14860586..14860639 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:32:51 has no hits.
FMO09257.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:46 Download gff for
FMO09257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33505-RA | 98..1195 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:04 Download gff for
FMO09257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U3-55K-RA | 111..1208 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:49 Download gff for
FMO09257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U3-55K-RA | 111..1208 | 1..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:49 Download gff for
FMO09257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14859709..14860535 | 63..888 | 99 | <- | Minus |
| 2R | 14860586..14860643 | 1..62 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:04 Download gff for
FMO09257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10747214..10748040 | 63..888 | 99 | <- | Minus |
| arm_2R | 10748091..10748148 | 1..62 | 93 | | Minus |
