FMO09258.5prime Sequence
1154 bp (970 high quality bases) assembled on 2010-09-13
> FMO09258.5prime
CAGTCGACATGCAGCTGATTCTCGTGGCGACCTTGCTGTGCCTGATAATC
GGCAGCTGCAGTGCATCCATAAGTGGGCCGTTCATCTTCTGGGGTCACTC
CAGGGTATCCAGTCAGCAAACCCAGGCCTTGGTGGAATCGAGCAGCAGGG
AGCTACCGCTGACGCAACTTTTCACAGAGGCCAAGGCAATTGTGGTCTTC
GTACGCAACACTACCAACCGACTGGAGGGCACCAGGTATCCCAAGTTCCA
GAATCTCGTTAAGAGCGGAGCCTGGACCTATCTGCCACAGAGGAGTCTGG
CGGCTGAACCCTTCGGCTTGAATGCCAACATTGAAGTGGTGAGTCTCTCG
GGACACGGAGAAGAGGATGACTCTGAGATTCTGTTGGCCTACAACGAAGC
CGTGAATACCTACGGTCGCGGTGAAGTGCTGGGCATCTTGGGCAGCCGTG
AGGAGGAGGCCCACTTCCTGGCCAAGAGGGAGGCTGCTCCAGGGGGTGAG
GAGGAGGAGAAAGCAAAGGCTGCTGAAGGTTCCGAGGAGACTGAGGCCAG
TTTCATCTACGTGGCCGAGGGCAACAAAGCGGTGCTTAGTCTCAACGGAC
CCCTGGAGCTCCGGGTGACCAATGACACTCTGAAGCTGGAGGAGCACATC
AAGCAGATTACCTTCGATGATCAGCGGGCCAAGGGATACGGTCGATTGAG
CATCACTTTCATGCATTCAGGGGAAAAGTGCACGCTGCGTTTTAATTCTC
CCTCATTCGGGATCCTGGACGTTGCGCAATGTGGAGGTGGAGTACCGGGA
GCTGAAGAGTGTCCTGTAGCACGTGGTGATGAGTACACACTGCCCTCCGC
ACCGCTGGGATTCTCGTACCGCTGCTCAGCGGAAAGCGTTACTTCCTGAA
TCCCGCCCGGAATGAGACATCCAGAGTCTCTTCCTCAGTGATTTCCAGTG
CAGCGTGCTCACGGACGACGGAATATGGTGGAGTGTACGACTGCATAGGA
TCGTGTCGGCACCCATCTGGCCGGACTGTCCGTCGTGACCTGCTTCTTGG
CTTCTGGACTCGGCATATCCGCCATGCTCGCCATGTACACGCCCAACGAT
TCAGAAGTTTCCGCGAACAGCAGATGACCTTCTACCGGTACAGAAAGCGA
GCTT
FMO09258.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31030-RA | 1671 | CG31030-RA | 59..1207 | 9..1143 | 5005 | 96.9 | Plus |
| CG31030-RB | 1616 | CG31030-RB | 59..1168 | 9..1102 | 5000 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30165201..30165977 | 1097..336 | 3025 | 96.5 | Minus |
| 3R | 32079331 | 3R | 30166032..30166361 | 338..9 | 1635 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:33:23 has no hits.
FMO09258.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:54 Download gff for
FMO09258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31030-RB | 66..1181 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:23 Download gff for
FMO09258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31030-RA | 55..1170 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:04 Download gff for
FMO09258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31030-RA | 55..1170 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:04 Download gff for
FMO09258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30166035..30166365 | 1..335 | 98 | | Minus |
| 3R | 30165191..30165977 | 336..1105 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:23 Download gff for
FMO09258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25990913..25991699 | 336..1105 | 96 | <- | Minus |
| arm_3R | 25991757..25992087 | 1..335 | 98 | | Minus |
