FMO09260.5prime Sequence
680 bp (680 high quality bases) assembled on 2010-09-13
> FMO09260.5prime
CAGTCGACATGGGTAAGGGTAACAATATGATTCCGAATCAGCACTACCAC
AAGTGGTGGCAGCGGCATGTGAAGACCTGGTTCAACCAGCCGGCCCGCAA
GGTCCGCAGGCATGCGAACCGCGTCAAGAAGGCTAAGGCCGTCTTCCCCC
GCCCAGCCAGCGGTGCCCTGCGCCCTGTGGTTCGCTGCCCCACCATCCGC
TACCACACCAAGCTGCGTGCCGGCCGTGGTTTCACCCTGGAGGAGCTGAA
GGGTGCCGGCATTGGCGCCAACTTCGCCAAGACCATCGGCATTGCCGTCG
ACAGGAGGCGCAAGAACAAATCCCTGGAGTCCCGCCAGCGTAACATCCAG
CGCCTCAAGGAGTACCGCAGCAAGTTGATCTTTTTCCCCATCAACGAGAA
GAAGATCCGCGCCGGCGAGTCCTCTCTGGAGGAGTGCAAGCTGTCTATTC
AGCTTAAGGGACCCGTCCTGCCCATCAAAAATGAGCAGCCCGCCGTGGTC
GAGTTCCGTGAGGTGACCAAGGATGAGAAGAAGTTCAAGGCCTTCGCCAC
GCTGCGCAAGGCTCGCACTGATGCCCGTTTGGTCGGAATCCGCGCCAAGC
GCGCCAAGGAGGCCGCTGAGAGCGAGGACGCCGCCAAGGGAGACCCCAAG
AAGGCCAAGAAGGCAAGCTTTCTAGACCAT
FMO09260.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL13-RC | 1186 | CG4651-RC | 306..959 | 9..662 | 3195 | 99.2 | Plus |
| RpL13-RB | 774 | CG4651-RB | 48..701 | 9..662 | 3195 | 99.2 | Plus |
| RpL13-RA | 791 | CG4651-RA | 65..718 | 9..662 | 3195 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9967937..9968248 | 250..561 | 1485 | 98.4 | Plus |
| 2L | 23513712 | 2L | 9967635..9967878 | 9..252 | 1220 | 100 | Plus |
| 2L | 23513712 | 2L | 9968315..9968418 | 559..662 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:33:20 has no hits.
FMO09260.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:53 Download gff for
FMO09260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL13-RB | 40..704 | 1..666 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:21 Download gff for
FMO09260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL13-RA | 57..721 | 1..666 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:02 Download gff for
FMO09260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL13-RA | 57..721 | 1..666 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:02 Download gff for
FMO09260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9967627..9967877 | 1..251 | 98 | -> | Plus |
| 2L | 9967939..9968247 | 252..560 | 98 | -> | Plus |
| 2L | 9968317..9968421 | 561..666 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:21 Download gff for
FMO09260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9967627..9967877 | 1..251 | 98 | -> | Plus |
| arm_2L | 9967939..9968247 | 252..560 | 98 | -> | Plus |
| arm_2L | 9968317..9968421 | 561..666 | 98 | | Plus |
