FMO09262.5prime Sequence
1070 bp (915 high quality bases) assembled on 2010-09-13
> FMO09262.5prime
CAGTCGACATGGTCAATCCATCGCCCGCCCGAGGTGGAGAATCCACTGCC
CCCCACATCCTCCCCAATGAGATGGAGAATGACGTGGACAAGAGAATAGC
GACGCCACCTCCAGCACCAGCCGGTAGCGATGTCATCGCCGATGTTGTGG
GCGACTTTGGCATCTGGCAGCTGAGAACCATTCTCATCATCTTCCTGTGC
AAAATCCCTGCCGCCTGGTTCATGGCCTGCATCATCTTCACCGGACCGGA
ACTTTATCCCGGCTCGGAGTTCACCTGCGACACCAGTTATTTGACTAGCA
GCAGCAACTCCAGTTTTAGTATTTCGGATAACCAGTGCTATGTCCTGGAC
GAGTCCACTGGCACCAGCTCCGAGTGCGAGCAGTTCAACTACGTATCCAG
TTTCGACTCCCTGATCATGCAGTTCAATCTGGTCTGCTTGAGGGACATCT
TCGTGGCCTGGACTCAGTACTGGCATTTGTTCGGAGTTCTTGTAGGCGGC
GTTATGGGCACCAAGATGATGCTGGGCATCAGCCCGAGGAGCACCTATTG
TGTCGGTGCTGTAGCCCAGATTTTGTGTGGAGTAGTCACTGGATATGCTA
GGGATTTTAGTCTGCACTGCGCCTTCCGTTGTCTCTCCGCTGTCTGTTGT
GCGATCATGTTCACAGCTGGTCAAGCCATATTTGCCGATATCACGGCGGG
AATGCATCGCATTGGTGCCATTATCCTATACGACACTTTCTGGTCCATTG
GTGTGATTCTGTTGCCAGGACTCTCCTCGTTCTTCAACAGCTGGTCCCTG
ATATATGTGGGCATCACATTCCCCACTATCATGCTGAACTTGCTGCTCTA
CTGGACTCCGGATTCACCTCCCTGGCTGCTCCCGCACGCTGCGGGATCGG
TTTTTCTTTGGCAATGTGGACAAATCTTCGTGGAGGGGAGCGGCGATAAT
GATCGCTCGTTCAGATCCCTCCGGGATTTCCGACACGAGCTGGACGACTA
AATGAAGCCTTGAGGGCCAACACCACCACCTCCTTTGACGAATTGTGAAG
GAAAGCGGCCAGGCCCAACT
FMO09262.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4462-RA | 2194 | CG4462-RA | 298..1354 | 8..1058 | 4670 | 97 | Plus |
| CG4465-RA | 1917 | CG4465-RA | 513..588 | 400..475 | 185 | 82.9 | Plus |
| CG4465-RA | 1917 | CG4465-RA | 264..371 | 154..261 | 180 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19923266..19923939 | 681..8 | 3370 | 100 | Minus |
| 3R | 32079331 | 3R | 19922884..19923196 | 994..682 | 1090 | 92.7 | Minus |
| 3R | 32079331 | 3R | 19917252..19917327 | 475..400 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:32:36 has no hits.
FMO09262.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:43 Download gff for
FMO09262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4462-RA | 1..998 | 9..1005 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:35:56 Download gff for
FMO09262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4462-RA | 291..1296 | 1..1005 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:41 Download gff for
FMO09262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4462-RA | 291..1296 | 1..1005 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:41 Download gff for
FMO09262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19922915..19923196 | 682..963 | 95 | <- | Minus |
| 3R | 19923266..19923942 | 1..681 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:35:56 Download gff for
FMO09262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15748637..15748918 | 682..963 | 95 | <- | Minus |
| arm_3R | 15748988..15749664 | 1..681 | 99 | | Minus |
