FMO09266.5prime Sequence
1027 bp (927 high quality bases) assembled on 2010-09-13
> FMO09266.5prime
CAGTCGACATGATTTCGGTAGCTCTGATTATCTTGTGCTTTTTTCCGTTC
GTGCAAAATGAGTACTTTCGTCCTTCGTACCAAGTCCTTGTGCGCAAAAG
GAATACTCAAGGAGATTTGATCGACGGCCATTGCTATGGCAATATCATTC
AGAGTCGCTTGGTTTTAACATCAGCATCGTGTTTATTGAGTGATAACGAT
TTCGTAAATGGTAGGGAATTGTTAAATGCTGATGAGTTGGCGGTATCATT
CAAAGGCGAAGATTTGAACGAGTTGATATACCTCGTTGGTGGCATAGACG
TATATCCGCAGTTCAATTTCTCATCGTTGGACAATGATATAGCGATCCTA
AGTCTCAGTACGCAACTTCCGCTTTCCGATCGAAACGATATTGAATGGGT
TTTAGTCGCTGACTATGATATTACCGATTTTCCATTGGAGGTTTTTTGTG
GAATCTTACGTTTGGAAAAATGCGGATGGAGAAAACATATATCCCGGTTA
TGGTGTTATTCATGAAAGTAATTTAGTTGGAATCATTTCCTATGGCTTGC
CATTGAAAAAATAAACGGGAATCTAATCTTGAAGTTCGGCGCCCAAATAG
GTTTACGCAATTAAATCCATATTTAAGTTGGATATATACAATAATACAGA
ATACAGAGATTGCGGACATTCAAAATAACAACTACAGTGTATCTCTACCT
TATCGTCAAAGAAAAATCGCAGAAATAGTGGAGGAATTCGTTGAGCCTGA
TGCGGTGTATTTTCCAGACCCAGCAAACCCCATTAAAGATGAGATTGAAA
CTGAGGTAAAAGATTTGACGGACTCAGAACTGATGCTGTAAACGTGGAAA
GCGTCTCAGAGATTTTTAACACGGAGGACCCTTTAATGAAAACATGAAGT
GAGAAGAATTCCTAAAAACCGAGCAAACAATCTAGGCCAAGAAGTTTGGT
GCATGGATATCACATTTAATTTTCTTCTAAGGATACTCCGCCAATAAATT
TCCATTTTTGGCAGCTTTCTAGAACAT
FMO09266.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34043-RB | 1227 | CG34043-RB | 43..1054 | 9..1009 | 4480 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10280398..10280830 | 441..9 | 2150 | 99.8 | Minus |
| 2L | 23513712 | 2L | 10280053..10280320 | 728..460 | 1295 | 99.6 | Minus |
| 2L | 23513712 | 2L | 10279629..10279688 | 786..727 | 285 | 98.3 | Minus |
| 2L | 23513712 | 2L | 10279524..10279570 | 829..783 | 220 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:32:23 has no hits.
FMO09266.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:38 Download gff for
FMO09266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34043-RB | 17..1035 | 9..1016 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:35:50 Download gff for
FMO09266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34043-RB | 43..1061 | 9..1016 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:35 Download gff for
FMO09266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34043-RB | 43..1061 | 9..1016 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:35 Download gff for
FMO09266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10279360..10279413 | 833..883 | 94 | <- | Minus |
| 2L | 10279520..10279570 | 783..832 | 96 | <- | Minus |
| 2L | 10279633..10279686 | 729..782 | 100 | <- | Minus |
| 2L | 10280053..10280320 | 460..728 | 99 | <- | Minus |
| 2L | 10280381..10280830 | 9..459 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:35:50 Download gff for
FMO09266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10279360..10279413 | 833..883 | 94 | <- | Minus |
| arm_2L | 10279520..10279570 | 783..832 | 96 | <- | Minus |
| arm_2L | 10279633..10279686 | 729..782 | 100 | <- | Minus |
| arm_2L | 10280053..10280320 | 460..728 | 99 | <- | Minus |
| arm_2L | 10280381..10280830 | 9..459 | 98 | | Minus |
