Clone FMO09270 Report

Search the DGRC for FMO09270

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:92
Well:70
Vector:pMK33-CFH-BD
Associated Gene/Transcriptdro4-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09270.5prime Sequence

239 bp (239 high quality bases) assembled on 2010-09-13

> FMO09270.5prime
CAGTCGACATGGCTCAAATTAAAGGATTGTTTGCTCTCCTCGCTGTGGTG
ACCATTGTCCTAATGGTGGCCAACTCGGCTTCGGCCGTGGATTGCCCATC
TGGAAGATTCAGTGGTCCTTGCTGGGCCTGGGATGGAGAGCAGTGCCGTC
GCCTCTGCAGGGAGGAAGGACGTGTCAGTGGACACTGCAGTGCCAGTCTG
AAGTGCTGGTGCGAACAATGCGCAAGCTTTCTAGACCAT

FMO09270.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
Drsl4-RA 323 CG32282-RA 18..230 9..221 1065 100 Plus
Drsl3-RA 360 CG32283-RA 58..245 28..215 460 83.6 Plus
Drsl5-RA 364 CG10812-RA 196..254 156..214 205 89.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3315637..3315849 9..221 1065 100 Plus
3L 28110227 3L 3315053..3315240 28..215 445 82.4 Plus
3L 28110227 3L 3316976..3317034 156..214 205 89.8 Plus
3L 28110227 3L 3314506..3314578 143..215 200 84.9 Plus
3L 28110227 3L 3369763..3369822 156..215 180 86.7 Plus
Blast to na_te.dros performed 2014-11-26 14:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 3408..3472 151..216 102 63.6 Plus

FMO09270.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:45 Download gff for FMO09270.5prime
Subject Subject Range Query Range Percent Splice Strand
dro4-RA 1..213 9..221 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:03 Download gff for FMO09270.5prime
Subject Subject Range Query Range Percent Splice Strand
Drsl4-RA 18..230 9..221 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:47 Download gff for FMO09270.5prime
Subject Subject Range Query Range Percent Splice Strand
Drsl4-RA 18..230 9..221 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:47 Download gff for FMO09270.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3315637..3315849 9..221 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:03 Download gff for FMO09270.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3315637..3315849 9..221 100   Plus