FMO09272.5prime Sequence
1106 bp (947 high quality bases) assembled on 2010-09-13
> FMO09272.5prime
CAGTCGACATGAGTTCGGCTCGCTTCGCGCGCTCAGGGCGCGTCCGTATC
TGCATCCTGATGAGCATGTTCATCGTGCTCATCATGATGATTGTTATCTA
CCAAATGTCCCAACACCAATTGGACGAGAGCCGCGCCTTCCAAGAGGGCC
TCAGTGTCCAGATGCAATCCCTGAATGCCGAAAAACTTACCGCCGAGAAG
AGAATGAGCGCGCTGCGCTCGGAAAAGATGACCCTGCAGGAGCAGTACGA
GGGTCAGTTGGCGGAGGCACTGCAGAAGCCGGACGACACGGAACACGCAC
TGCAGGAGAAGTTCGACGCTCAGGTGGAAAAGTACAAGCTGCTGGAGATT
AAGTACACCAACCTGGAGGCCGAGTTCTTTTTTAGCAAGAAGAAACACAT
CGAGGACACGAACGCTTTCGACCAAAAGCTGCAAAAGGTCCTTTTCGTTT
TCTTCATAAGGACAAGGCCAGCAAGGAGCGCGAGGTGGCTGCCTGGAAGG
AAAAGCTGGACAAGCTACAGCGCGATGGTGAGCACAAGATTCACGCCCTG
GAAGCCACAATTGCGGAATTCAAGACCAACTGCAACTATGTACCTAAAGT
CCAGCCCGCCGAGGCACCGGTCCAGGGACACCAGCAGCAACTGAATAAGC
CCGCCGAGCAGATGCCCACCACGCACCACTCAAATCCTGCCCAGCTAGCG
CACAGCATTGAAAAGCCCCGCAACGAGAAGTCCTTCGATGCCCAAGTGCA
AATTGTGCCCAAATCGGTCAGTGAGAAGCAACAGCAGAGGAGCCGCAACT
ATCCGGCGGTCCTGTTTCCCCGTTAAGTGCACCCCGCAAGAGCAGCACCC
AAGCCTCAGTGGGCAGCGCTTCGGACAAGAAAGCCCGGTGATGCCCCCAA
CGCATCTGTAGCCCCAAAAGTTAGTAGCAGCGGCCTTCCCCCGCTTGCAG
GGCCACCAGCGAGACTGGAGCGCAAACTTTCCGAACGTGGCTCCCATTCC
GAGACTTTGAGACAAAGCGGATACTAAGGCGACGCTGTCGATGTAGAACA
CGCCCGCCGAAGACTGCCGAAGACGAACACATCGTACGCCCACGCAGTTA
ATGATT
FMO09272.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12213-RD | 2640 | CG12213-RD | 345..1451 | 9..1105 | 4825 | 96.7 | Plus |
| CG12213-RB | 1714 | CG12213-RB | 111..1217 | 9..1105 | 4825 | 96.7 | Plus |
| CG12213-RE | 2439 | CG12213-RE | 111..851 | 9..751 | 3500 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11966796..11967125 | 500..169 | 1415 | 95.8 | Minus |
| 3R | 32079331 | 3R | 11966488..11966741 | 751..498 | 1270 | 100 | Minus |
| 3R | 32079331 | 3R | 11965978..11966286 | 1054..752 | 1050 | 94.5 | Minus |
| 3R | 32079331 | 3R | 11967188..11967347 | 168..9 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:32:44 has no hits.
FMO09272.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:44 Download gff for
FMO09272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12213-RB | 163..1245 | 3..1081 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:00 Download gff for
FMO09272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12213-RB | 106..1188 | 3..1081 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:45 Download gff for
FMO09272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12213-RB | 106..1188 | 3..1081 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:45 Download gff for
FMO09272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11965955..11966286 | 752..1076 | 94 | <- | Minus |
| 3R | 11966488..11966739 | 500..751 | 100 | <- | Minus |
| 3R | 11966797..11967125 | 169..499 | 96 | <- | Minus |
| 3R | 11967188..11967352 | 3..168 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:00 Download gff for
FMO09272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7791677..7792008 | 752..1076 | 94 | <- | Minus |
| arm_3R | 7792210..7792461 | 500..751 | 100 | <- | Minus |
| arm_3R | 7792519..7792847 | 169..499 | 96 | <- | Minus |
| arm_3R | 7792910..7793074 | 3..168 | 98 | | Minus |
