FMO09274.5prime Sequence
1121 bp (1005 high quality bases) assembled on 2010-09-13
> FMO09274.5prime
CAGTCGACATGCCAAAGCCCTCTAAACAGGACTCTATCTCGTTAAAATCC
AGTAACTCAGTTTTTTTGGAAGATGACCAATTCGAAAATCTAGAGGAAGA
GTTTCTGCATAATGAATGCATTAGTTTACCCTCCGACTTAACGAGAGTAC
AAAGTGTTATTTTGGACTACAAGCAGTTCAAAGCGGCTCGCACAATTCAG
CGTTATATTCACGGATGGCTAGTTCGAGAAAATTTCCGAAAACTTCAGAA
GTCTGCGATTATTATTCAAAAATGGTGGCGCCGTTTTGAGGCTCAGAAAA
ATTTGCTTTATGTGGCCGAAAGCGCTTTGCAGTCGGCTGTTTTGGCCCAT
TACGACAAGTCTGCTACCCTGATTCAGACGCTCTATCGCGGATGGTGGTC
GCGAAAACATATCTTTGACCTAACCATGCTCAAGAGCGTGCAGATATTGT
TGGCAAAGGACCTGATTCACTCTTTGGTCAATTACTTGCACGCAACGAAA
AATTCTGAAATGCTTCCAGGCATTTACACGATACGGGACTCGAGCATATG
TCTGGAAACATTGGAGGAACTGATGGCAACATTTGGCTTTCGATTCTATA
ACGCTAATGCTTGCTACAAAATGAAGGAAACGTTGTCAATGGTGGCACAG
AGCCGAAAGACGTTTACGGCCACATCCTATTTCACGGATGTACCATATCC
CGGGTTTAATGATCGAGGATTTTGTGGCCCTCGGCAGAATTCTGCCATGA
CCTTGAATGCCAAAGATCCAGAACATTATGAATTGATTCACATATTCCTG
TCCGGTAGTAGAAAAATTGGCATGACAACGGCTAAGCTCGAACAGAAAAT
AGCCCACATTGCAGAAGAAAATCGCTTAAATATGTTTATAAAGAGGGACA
ACAAGAAAAAGAGTTTTATTAAAGGATTTATCTTGACATGAAGACTGGCA
TACTCAAATGGAGATCCAATCTTCCATCAGCTTGTTTAAAATAGTGAGAT
GCTGCGTCTGAAAGTGCCAGAAACCTGGAATCAATTTGGTGACTGGGAGC
GTGGTTGTCAACGAACAAGAAAAACCTCTTTAATTCTCTTATAGATTCTT
GCAGCTTCTAGACATTCGATG
FMO09274.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18063-RE | 1276 | CG18063-RE | 84..1200 | 9..1100 | 4870 | 97 | Plus |
| CG18063-RC | 1283 | CG18063-RC | 84..1200 | 9..1100 | 4870 | 97 | Plus |
| CG18063-RD | 1280 | CG18063-RD | 84..1197 | 9..1100 | 4815 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15958184..15958584 | 144..544 | 1990 | 99.8 | Plus |
| 2L | 23513712 | 2L | 15958697..15959028 | 543..874 | 1645 | 99.7 | Plus |
| 2L | 23513712 | 2L | 15958031..15958132 | 44..145 | 510 | 100 | Plus |
| 2L | 23513712 | 2L | 15959097..15959231 | 874..1002 | 380 | 94.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:32:02 has no hits.
FMO09274.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:33 Download gff for
FMO09274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18063-RC | 84..1144 | 9..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:35:39 Download gff for
FMO09274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18063-RC | 84..1144 | 9..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:24 Download gff for
FMO09274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18063-RC | 84..1144 | 9..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:24 Download gff for
FMO09274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15957941..15957975 | 9..43 | 100 | -> | Plus |
| 2L | 15958031..15958132 | 44..145 | 100 | -> | Plus |
| 2L | 15958186..15958584 | 146..544 | 99 | -> | Plus |
| 2L | 15958699..15959027 | 545..873 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:35:39 Download gff for
FMO09274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15957941..15957975 | 9..43 | 100 | -> | Plus |
| arm_2L | 15958031..15958132 | 44..145 | 100 | -> | Plus |
| arm_2L | 15958186..15958584 | 146..544 | 99 | -> | Plus |
| arm_2L | 15958699..15959027 | 545..873 | 99 | -> | Plus |
