FMO09303.5prime Sequence
518 bp (518 high quality bases) assembled on 2010-10-13
> FMO09303.5prime
CAGTCGACATGGGTAGCGTTTTAAGTAGATCAGATCAGCCTAGAGATTCT
GTCGCCTACAGAAACTTCCTGACAGTCTACAGGAATCAGCACAAACAAAT
GAGTTCCAATGATGCACTTTTGAGTGCATCACGTGAATGGGGAACTTTAT
CGCAGGCTCAGCGGAATCGATATGCTAACATGAAGGACTCCCCCAAGCGG
GGCACAAAAAACATAACGGAGAATGCGGCTGCTCGTAGAAAGATTACTAA
AAAGAATTCCCGGTCGAAGAGAATTTCTCAGCGGCGGATTCAAGATAAGG
GGTCTGCTTATAAGCCGCTAACCCTCAACAGATCTTACGTAATACGGAAG
AGTTTGGTTCCCTCAAGAGGCTTTCTAAACTTAGTGCAGTTCTTCCAAGA
GATCCATAGCGAAATGCCAAGATCGTTGGCCGTGAAAGAGGCTGTTAGTT
CCTGGTGCGCTATGAATGCGGATCAGCGTGGCATTTTCATATCAGACTTA
GCAAGCTTTCTAGACCAT
FMO09303.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tpl94D-RA | 1491 | CG31281-RA | 104..595 | 9..500 | 2460 | 100 | Plus |
| Tpl94D-RB | 1488 | CG31281-RB | 104..592 | 9..500 | 2405 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22966628..22966946 | 182..500 | 1595 | 100 | Plus |
| 3R | 32079331 | 3R | 22966387..22966560 | 9..182 | 870 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:42:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 5717..5746 | 369..398 | 105 | 83.3 | Plus |
FMO09303.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:06 Download gff for
FMO09303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31281-RA | 82..578 | 1..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:59 Download gff for
FMO09303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpl94D-RA | 99..595 | 1..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:23 Download gff for
FMO09303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpl94D-RA | 99..595 | 1..500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:23 Download gff for
FMO09303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22966629..22966946 | 183..500 | 100 | | Plus |
| 3R | 22966382..22966560 | 1..182 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:59 Download gff for
FMO09303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18792104..18792282 | 1..182 | 97 | -> | Plus |
| arm_3R | 18792351..18792668 | 183..500 | 100 | | Plus |
