FMO09307.5prime Sequence
1115 bp (1000 high quality bases) assembled on 2010-10-13
> FMO09307.5prime
CAGTCGACATGGACAACTACAGATTCGGCACAGTGGACTACTTAGTGTTA
GTGGCCATGACGTTATTATCCACGGGAACGGGAATATATTTCGGTGCCTT
AAAGAAAAAACATAAAAACAAGAAAAGTGTTTCAGAAGACAATAGAAGGA
CCAATTTTGGATCTGAGAAGATAGATGAGTATCTTATGGGTTCTCGAAAT
ATGAAAGTGATCCCAGTATCCATCACTTTGTATCGGGTAACTTCCATCAT
TGGAACTCCCTCTGAGATCTATCATTATGGCACCCAGTACTATCTCATTA
TCGTAGCCATTATTCTTCAAGGAATAGCCTTCTCCTATGTATACTTACCA
GTGTACTCAGCTCTGCAAATTGGATCTGCATACGAGTACTTGGGATTGCG
ATTCAACTCGATTATTAGGACCACAGCATCTTTTATGTATGTTTTTGGTA
TTCTTACTTACTTGCCATTCATTGTATATGTTCCGGCATTATCGTTAAGC
CAGGTTTCTGGTCTCAATACCCATCTGATTGGACTGGTAATCATACTCGC
TTGCGTCACCTACACATTTATGGGTGGCCTGAAGGCTGTGGTCCACACGG
ATGTTTGGCAAGTGGCTGTTATGTTTCTCTCCCTGGTTGCGGTTGCCTTT
TTGGCCATATACTACTCTAATGGCTTGGTAGCTGTATTCGACGACGCGGA
ACAGGGTGGACGATTGATGCTGGCCAACACGAATCCATCTCCCTATGTTC
GCCATACAGTCTGGAGCGTTCTCATCGGTGGCTTTTCATTCTGGACCTCA
GTTAATGCCGGTGGTCAGCATATGGTGCAGCGATATATGTCACTACCTTC
ACTGAAGAAATCTAGACAGGCTTCATTCATCTTCACCATTGGAGTGTCTA
TCTTTATCGCTCTTTGTTGCTTTATGGGTTTGCTACTTTTCTCGAAATAC
AAGACTGCGATCCTCGGGTGCTGGCATGATTTTGAATGACGATCAACTTT
TGGCCTTGTTTGTGTCAAGTGTTGGGCCTTATTACGGAATGCCTGTCTGT
TATAGGCGATATCGGACCAGCTTAGTTCCCTCTCTGTCAATACGGTCAAT
GGCTTCTGAAGATAT
FMO09307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31262-RB | 2163 | CG31262-RB | 302..1350 | 9..1051 | 5030 | 99 | Plus |
| CG31262-RE | 1988 | CG31262-RE | 127..1175 | 9..1051 | 5030 | 99 | Plus |
| CG31262-RF | 2001 | CG31262-RF | 127..1188 | 9..1051 | 4890 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17218109..17218523 | 984..572 | 1975 | 99.5 | Minus |
| 3R | 32079331 | 3R | 17218931..17219091 | 386..226 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 17219161..17219282 | 225..104 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 17219337..17219432 | 104..9 | 480 | 100 | Minus |
| 3R | 32079331 | 3R | 17218576..17218645 | 573..504 | 350 | 100 | Minus |
| 3R | 32079331 | 3R | 17218811..17218878 | 452..385 | 340 | 100 | Minus |
| 3R | 32079331 | 3R | 17218703..17218754 | 504..453 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:42:30 has no hits.
FMO09307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:07 Download gff for
FMO09307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31262-RB | 302..1362 | 9..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:03 Download gff for
FMO09307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31262-RE | 127..1187 | 9..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:26 Download gff for
FMO09307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31262-RE | 127..1187 | 9..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:26 Download gff for
FMO09307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17218109..17218522 | 573..984 | 99 | <- | Minus |
| 3R | 17218577..17218644 | 505..572 | 100 | <- | Minus |
| 3R | 17218703..17218754 | 453..504 | 100 | <- | Minus |
| 3R | 17218811..17218876 | 387..452 | 100 | <- | Minus |
| 3R | 17218931..17219091 | 226..386 | 100 | <- | Minus |
| 3R | 17219161..17219282 | 104..225 | 100 | <- | Minus |
| 3R | 17219338..17219432 | 9..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:03 Download gff for
FMO09307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13045060..13045154 | 9..103 | 100 | | Minus |
| arm_3R | 13044653..13044813 | 226..386 | 100 | <- | Minus |
| arm_3R | 13044883..13045004 | 104..225 | 100 | <- | Minus |
| arm_3R | 13043831..13044244 | 573..984 | 99 | <- | Minus |
| arm_3R | 13044299..13044366 | 505..572 | 100 | <- | Minus |
| arm_3R | 13044425..13044476 | 453..504 | 100 | <- | Minus |
| arm_3R | 13044533..13044598 | 387..452 | 100 | <- | Minus |
