FMO09308.5prime Sequence
1064 bp (999 high quality bases) assembled on 2010-10-13
> FMO09308.5prime
CAGTCGACATGACAATCGAATGGGCTCCTCTCCGGGTTCCGCTGGAACGG
CGGCTTCAGACCCTGGTTACGTCATTCTTCACCTATACCTTCTTTACGCT
GCCCATCTCGTCCTGCCTCGCAGTAGCTATCCTGCTGTACTACGGCGAAA
TGTTTGTGCGTAGTCTGCTTCTTATCTATTTTGTGAAAATTTATTTGGAT
TATAAAAGAAATTACGGCATTATGGAAGGTAATGGTTGGTTATTCTACCG
CAGCAATTGGAGATATCGAAACTACTTCCCCGTCGAACTTGTAAAAACCG
CCGAGCTGCCTCCCAACAGGAACTATATCGTAGCAAGCTTTCCACACGGA
ATACTTGGTACTGGAACTTGCATTAACATGAGCCTGGACATCGACAATTG
GCTATCCCTTTACCCGCACGTTCGACCCAAGATCGTCACCCTGGATCATC
ACTTCAAGACGCCTTTCCTGCGTGACATATTGCGCTGGTGGGGCATGGTA
TCGGTTTCCAAGGAATCCCTGTCCTATTTACTCAGCAAGTCAAATGATCC
AATGCACAAGGATAATCGGGATGGTTTCACATCCAATGCGGTGGCCGTAC
TTGTTGGTGGCGCCAAGGAAGCCATGGATTCGCATCCGGGACAGTACATT
TTGACCCTCAAGGATAGAAAGGGTTTCGTCAAAATGGCTGTTCGAACCGG
ATCGTCGATTGTGCCCTCGTTGTCCTTTGGCGAGGTGGACATATTTGATC
AGGTGGCTAATCCTCCGGACTCCTCGCTCCGTCGCTTCCAGAATGTGGTC
AAGAAATTCACAGGCATTTCACCGCTCCTTCCCAAGGGTCGCGGTATCTT
CAACTACAACTATGGCATTCTCCCACATCGACGACGTATTGTCCAAGTGT
TGGTTCCCCCATCGATGTGGAAAGATGCGAGACTCCCGATCCCGAATATG
TGGACAGATCCATGGGCAGTGATCGACGCGCTGGCGAGGATGTTCGATGA
TAACAAGAGAAGTACACTCCAAACTCAGCATATCAAACTTATATACAGCC
AGCTTCTAGAACAT
FMO09308.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1946-RA | 1189 | CG1946-RA | 60..1107 | 8..1048 | 5030 | 99 | Plus |
| CG1942-RA | 1305 | CG1942-RA | 458..1104 | 273..918 | 945 | 76.9 | Plus |
| CG1941-RD | 1203 | CG1941-RD | 328..985 | 264..920 | 640 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7715878..7716220 | 358..700 | 1700 | 99.7 | Plus |
| 2R | 25286936 | 2R | 7716278..7716476 | 700..898 | 995 | 100 | Plus |
| 2R | 25286936 | 2R | 7714982..7715111 | 8..137 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 7715700..7715823 | 235..358 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 7716544..7716693 | 899..1043 | 505 | 95.3 | Plus |
| 2R | 25286936 | 2R | 7715531..7715629 | 137..235 | 495 | 100 | Plus |
| 2R | 25286936 | 2R | 7713316..7713625 | 370..679 | 485 | 77.1 | Plus |
| 2R | 25286936 | 2R | 7713708..7713901 | 705..898 | 310 | 77.3 | Plus |
| 2R | 25286936 | 2R | 7711076..7711404 | 360..688 | 280 | 72.3 | Plus |
| 2R | 25286936 | 2R | 7711481..7711674 | 705..898 | 250 | 75.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:42:34 has no hits.
FMO09308.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:07 Download gff for
FMO09308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1946-RA | 1..1052 | 9..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:05 Download gff for
FMO09308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1946-RA | 51..1112 | 1..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:28 Download gff for
FMO09308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1946-RA | 51..1112 | 1..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:28 Download gff for
FMO09308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7714973..7715111 | 1..137 | 97 | -> | Plus |
| 2R | 7715532..7715629 | 138..235 | 100 | -> | Plus |
| 2R | 7715701..7715823 | 236..358 | 100 | -> | Plus |
| 2R | 7715879..7716220 | 359..700 | 99 | -> | Plus |
| 2R | 7716279..7716478 | 701..899 | 99 | -> | Plus |
| 2R | 7716545..7716704 | 900..1054 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:05 Download gff for
FMO09308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3602478..3602616 | 1..137 | 97 | -> | Plus |
| arm_2R | 3603037..3603134 | 138..235 | 100 | -> | Plus |
| arm_2R | 3603206..3603328 | 236..358 | 100 | -> | Plus |
| arm_2R | 3603384..3603725 | 359..700 | 99 | -> | Plus |
| arm_2R | 3603784..3603983 | 701..899 | 99 | -> | Plus |
| arm_2R | 3604050..3604209 | 900..1054 | 93 | | Plus |
