Clone FMO09314 Report

Search the DGRC for FMO09314

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:93
Well:14
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13427-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09314.5prime Sequence

341 bp (341 high quality bases) assembled on 2010-10-13

> FMO09314.5prime
CAGTCGACATGAAGTTCGTGGCCATTCTTCAGCTGAGCAGCCTCACCATT
GCGATGGTTTTGGCATTTCCTGATAACGACGATAAAAATGTTCTTGTGCC
AGCTGATATGCAGCATGTTGCTCCACTGGCCGCAGCAGCAGATCCCCCGA
CGTCGGCAGACCAAGTCTCTAACAGCATACGCGGTCCACGCCATCTCCTG
AGCAAATTGTTCCAGCCCAAGACCGTGGTGGTGCAGCCAGTGATTGTGGA
GCAGGTGGCTCCAAGACAGTACCCCGGATACGCACAGCCCTATCCGTACT
ACAACCAGGGCCGACGCTACTGGGCAAGCTTTCTAGACCAT

FMO09314.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13427-RA 440 CG13427-RA 47..366 4..323 1570 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20538951..20539270 323..4 1570 99.4 Minus
Blast to na_te.dros performed on 2014-11-26 14:42:46 has no hits.

FMO09314.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:09 Download gff for FMO09314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13427-RA 42..364 1..323 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:11 Download gff for FMO09314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13427-RA 44..366 1..323 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:32 Download gff for FMO09314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13427-RA 44..366 1..323 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:32 Download gff for FMO09314.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20538951..20539273 1..323 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:11 Download gff for FMO09314.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16426456..16426778 1..323 98   Minus