FMO09324.5prime Sequence
1120 bp (975 high quality bases) assembled on 2010-10-13
> FMO09324.5prime
CAGTCGACATGTTAAAGATAAATCCGCGAATGCTGATGCAACAGTGCCTG
CGCCACGCCCACAGCCAGGTGCGCGTCCGCTTCGCCCCAAGTCCCACGGG
TTACCTGCATTTGGGCGGTCTGCGCACAGCCCTGTACAATTTCCTGTACG
CCAGGCATTTGGGCGGAAAATTCCTGTTGCGGATCGAGGACACGGATCAA
ACTCGACTAGTGCCCGGTGCCAGTGAACGACTGGTGGAGGATCTGCTCTG
GGCAGGCATAGAAATTGACGAGGGACCCGGTTTTGGCGGTCAACTGGGAC
CCTATGTGCAGAGTCAGCGAACGGAAATTTACAGCAAAGCCATTGAAGAA
CTGCTCCATAATGGCACCGCGTACAGATGCTTTTGCACCGAACGCCGTCT
GGATTTGTTGCGTAAGGAGGCGCTGAGAACCCTTTTTGTTCCACGCTATG
ATAACAAGTGCCGACATCTAACGACTTCGGAAGTGGATTCCCTACTGGCC
AAGGGTACACCCTACTGCATACGATTCAAGCTGACGGATCACGAGGAGCC
ACTGGATGATCTCATCTACGGCAAGGTGCATCACAATGTCAGCGACAACG
AAGGCGATCCAGTGGTCATGAAGAGCGATCAATTTCCCACCTATCACTTT
GCCAACGTGGTGGACGACCATTTGATGGGCATCACCCACGTCCTGAGGGG
CGTGGAGTGGCAGATATCCACCACCAAGCATTTGCTGCTCTACAAAGCTT
TTGGCTGGCAGCCCCCTAAATTTGGTCACCTGCCGCTTTTGGTGAATGCA
GATGGCACCAAGCTAAGCAAACGTCAAGGAGACATTGGCATTCAGCACTT
TCGGGAACGCGGCTACTTTCCGCAGCTTTAGTGAACTATGTGGTTTCTGC
AGGCGGAGGATTCGAGCATCGTACCAATGCCAAGCAGCAGCTGCTCAGCA
TGCAGCGCTCCATGAGCAGTTTCACATAGAGCGCGTCAACTCCCATCCGA
GTCGCCTTAATCCCGAACTGCTCGATGATCTAATCGCCTGGAGATGTGCA
TCGTTGTCTGGGAATGAAGTCGTACAAACTGTCATGAATGCCACAGCTTG
TGTAAGAAGGCCTATCCGCA
FMO09324.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4573-RA | 1700 | CG4573-RA | 67..1187 | 9..1120 | 5185 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16416315..16416728 | 745..332 | 1995 | 98.8 | Minus |
| 3L | 28110227 | 3L | 16416786..16417111 | 334..9 | 1630 | 100 | Minus |
| 3L | 28110227 | 3L | 16415922..16416248 | 1067..746 | 1370 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:42:42 has no hits.
FMO09324.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:09 Download gff for
FMO09324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4573-RA | 48..1143 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:08 Download gff for
FMO09324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4573-RA | 60..1155 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:31 Download gff for
FMO09324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4573-RA | 60..1155 | 1..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:31 Download gff for
FMO09324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16415897..16416248 | 746..1088 | 96 | <- | Minus |
| 3L | 16416315..16416725 | 335..745 | 98 | <- | Minus |
| 3L | 16416786..16417118 | 1..334 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:08 Download gff for
FMO09324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16408997..16409348 | 746..1088 | 96 | <- | Minus |
| arm_3L | 16409415..16409825 | 335..745 | 98 | <- | Minus |
| arm_3L | 16409886..16410218 | 1..334 | 98 | | Minus |
