FMO09334.5prime Sequence
680 bp (680 high quality bases) assembled on 2010-10-13
> FMO09334.5prime
CAGTCGACATGGACTGCCGCACATCGTTCCTGAAAGCCGTTCTTATCGTT
CTCAATGTGCTGCTATCGCTGATTGGAGTGACGTTGATTGCTCTGTCCGT
GTACGAGCTGAACAGCTCCACGCCGGGCACCTTCGAGCACATCGCCATCG
TTGTCCAGATCTTCGTGGGCACCTTCGTGGTCCTGACCTCGTTTCTGGGC
TGCTTTGCCACCGCTCGGGTTTCCCTGGGACTGGTTTGGAGCTATGTGAT
CTGCCTGCTGATCCTGCTGTGCCTGCAGATTTATATTATCGCGGCAGCCC
ACTCCACGGACTACGTGGAGCGATCCAAGAAGGATTTCCTGGCCACCTGG
GCTGATCAAAGGACCAATGTGGAGCGCATATCGCTCCTTGAGCAAAAGTA
CTCCTGCTGCGGCCAGTTGGGCGCCCATGACTACATCCTGATGGGACGGG
GTATACCCTTGAGCTGCTACAAGGATCAGGAGCGGCGCGAGTACAGCCTC
TTCTCCGGGGGCTGCCTGCAGGCCGTGCAGGCGCATGCCACGGACAACGT
GGCCATCGGACTCATCATCAAGTGGCTGCTGCTTCTGGTGGAGTTCGCCG
CCCTGGGAGCCGCAACCCACTTGGGCATCACGGTGCGCAATAAATTGCGG
CGCGAAAGATTCGCAAGCTTTCTAGACCAT
FMO09334.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42En-RB | 1326 | CG12839-RB | 188..843 | 7..662 | 3280 | 100 | Plus |
| Tsp42En-RA | 970 | CG12839-RA | 188..843 | 7..662 | 3280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7053525..7053721 | 397..593 | 985 | 100 | Plus |
| 2R | 25286936 | 2R | 7053062..7053236 | 68..242 | 875 | 100 | Plus |
| 2R | 25286936 | 2R | 7053301..7053456 | 243..398 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 7053846..7053916 | 592..662 | 355 | 100 | Plus |
| 2R | 25286936 | 2R | 7052934..7052995 | 7..68 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:43:01 has no hits.
FMO09334.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:11 Download gff for
FMO09334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42En-RA | 155..819 | 1..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:18 Download gff for
FMO09334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42En-RA | 182..846 | 1..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:39 Download gff for
FMO09334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42En-RA | 182..846 | 1..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:39 Download gff for
FMO09334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7052928..7052995 | 1..68 | 94 | -> | Plus |
| 2R | 7053063..7053236 | 69..242 | 100 | -> | Plus |
| 2R | 7053301..7053456 | 243..398 | 100 | -> | Plus |
| 2R | 7053527..7053721 | 399..593 | 100 | -> | Plus |
| 2R | 7053848..7053919 | 594..666 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:18 Download gff for
FMO09334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2940433..2940500 | 1..68 | 94 | -> | Plus |
| arm_2R | 2940568..2940741 | 69..242 | 100 | -> | Plus |
| arm_2R | 2940806..2940961 | 243..398 | 100 | -> | Plus |
| arm_2R | 2941032..2941226 | 399..593 | 100 | -> | Plus |
| arm_2R | 2941353..2941424 | 594..666 | 97 | | Plus |
