FMO09335.5prime Sequence
962 bp (962 high quality bases) assembled on 2010-10-13
> FMO09335.5prime
CAGTCGACATGTCAGATTCGACTATTTTCCGTTTTTCAGCGGACAGCAAC
GTATCCAGTTCGAGCTCCAATTCCAGTGTATCCGACTCTTCTGTGGACTC
CCATTCATCCATAGAATCCAATTCGGGACACAATACATCCGTGGAATCTC
AGTCATCCGCGGAATCTGATTCATCCGCTGATTCCCATTCGTCCTTGGAA
CGCCCATCCCCAGTGGAGCGTGATTTATCTGTGGAATCAGACTCATCTTC
AGCCACCAATACCAGCGAATCTTCAGTCGGAGAAGCTTCAAACCAACTGC
AGTCACCGCAAAGCAATAACCCCTTAAATATGGCTAACTTGTCTGTCTCG
ACTGAAGATGCTCATTCGCAGATCAGATCACTTACCCAGGATGTGATCCA
GATGGAAGCAGAGTTGGATCGCATGAATCTCTACTGCGAGGAAGTTGTGG
CACAGATTGACACCTTCGCCACGAGAACCTCAACGCCAACAACTCGTAGA
ATTCGCCGCAGAACGAGTCCAGTAGAAGTGATAGATCTGTCCCATTTGGA
CCGTGCACCACCTGTTCGATCCGCTCGGAATCGTGATCCCGATGCTTTCA
TCGATCTATGCACCCCCGAAGGCCCAAGAAGTCGCACAGTGAATCTTCAC
TCCAACGACTCCCTCACCATTCTGCCACGTCGGTCAGCCGAAAATGACCC
GGTAGTGGATCTCGACGTTGCGTCGCCACCAAAACGCGTTAATCGCGACA
TTGATGAGTCCCAAAAAGAGGAGTTATACAAGTGCCCCATCTGCATGGAC
AGTGTATCGAAGCGCGAGCCAGTGTCAACCAAATGTGGACACGTCTTCTG
CTGCGAATGCATCGAAACAGCCATCAGAGCTACGCACAAGTGCCCAATAT
GCAACAAGAAGCTGACCGCACGTCAATTCTTTCGCATTTACTTGGCAAGC
TTTCTAGACCAT
FMO09335.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgrn-RB | 1611 | CG10981-RB | 335..1270 | 9..944 | 4650 | 99.8 | Plus |
| dgrn-RA | 1632 | CG10981-RA | 383..1291 | 36..944 | 4515 | 99.8 | Plus |
| dgrn-RD | 1635 | CG10981-RD | 386..1294 | 36..944 | 4515 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5825805..5826235 | 514..944 | 2140 | 99.8 | Plus |
| 3R | 32079331 | 3R | 5825057..5825444 | 36..423 | 1940 | 100 | Plus |
| 3R | 32079331 | 3R | 5825499..5825588 | 424..513 | 435 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:43:04 has no hits.
FMO09335.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:12 Download gff for
FMO09335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10981-RB | 337..1289 | 1..955 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:19 Download gff for
FMO09335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgrn-RB | 337..1289 | 1..955 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:40 Download gff for
FMO09335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgrn-RB | 327..1279 | 1..955 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:40 Download gff for
FMO09335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5825057..5825444 | 36..423 | 100 | -> | Plus |
| 3R | 5825499..5825588 | 424..513 | 98 | -> | Plus |
| 3R | 5825805..5826244 | 514..955 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:19 Download gff for
FMO09335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1650779..1651166 | 36..423 | 100 | -> | Plus |
| arm_3R | 1651221..1651310 | 424..513 | 98 | -> | Plus |
| arm_3R | 1651527..1651966 | 514..955 | 98 | | Plus |
