FMO09336.5prime Sequence
710 bp (-86 high quality bases) assembled on 2010-10-13
> FMO09336.5prime
CAGTCGACATGGCAGGTCCTTTTATATCACCGCTGCCCGGCGATCTGCTC
ACGGAGTATATGTTTGGCCGTAGGCGACAGCGCCGGAACCGGACGACCTT
CACGCCACAGCAGCTGCAGGAGCTGGAGGCACTCTTCCATAAGACCCACT
ATCCCGACGTCTTCCTGCGCGAGGAGGTGGCCCTGAGGATCAGCCTCAGC
GAGGCACGCGTCCAGGTGTGGTTCCAGAATCGCCGGGCCAAGTGGCGCAA
GCAGGCACGACTGCAGCTCCTCCAGGACGCCTGGCGGATGCGCTTCCTCA
TCCTGGGCACGCCCCCCGTCATGGGCGGTGGATCGGTGCAGGGCGGATCC
GGCAACGGAGCTACGGCTCGACCGCCCAGCCAGACGCCGGAGAACCTCTC
TTCCGCGAGCAAGGATTCGGAACTGGCGGAGGTTGGTTATGGACCCAATT
CGGGGAGCTTCACCATGATTCACCCGGCATTCCAGCAGCAGCATCAGCAA
CAACTGCACCAGGGACACCAGCAGGCCACGGATCAGGATAAGCTATCGAA
GACCTATACTGAACTAAAAGCTCTATAAGGCGCCCGTCGCACGGCATGGA
ACTGGGCGGAATGGTCGCCCTATCCGGACACTCCGACTAGGGGTTCCGAT
GGATCCGATTCCGAGGATTTGATCTCACCTCCGGCGCCTGTATCTATTTT
TTCCCAGAGC
FMO09336.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:43:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11294-RB | 1291 | CG11294-RB | 158..856 | 9..710 | 3165 | 97.2 | Plus |
| CG11294-RA | 1068 | CG11294-RA | 158..856 | 9..710 | 3165 | 97.2 | Plus |
| Rx-RB | 3267 | CG10052-RB | 1969..2139 | 77..247 | 275 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8692265..8692749 | 699..213 | 2045 | 96.5 | Minus |
| X | 23542271 | X | 8693254..8693463 | 218..9 | 1035 | 99.5 | Minus |
| 2L | 23513712 | 2L | 578169..578318 | 106..255 | 240 | 77.3 | Plus |
| 3R | 32079331 | 3R | 18237911..18237996 | 168..253 | 190 | 81.4 | Plus |
Blast to na_te.dros performed 2014-11-26 14:43:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6836 | 483..543 | 161 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6850 | 483..524 | 147 | 83.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6774 | 483..523 | 142 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6795 | 483..523 | 142 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2390 | 483..524 | 138 | 81 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3294..3382 | 483..569 | 133 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6866..6910 | 480..524 | 126 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2386 | 483..523 | 124 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2395 | 483..523 | 124 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2404 | 483..523 | 124 | 78 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1122 | 483..523 | 124 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2528 | 483..559 | 119 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6838 | 483..524 | 111 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1586 | 482..512 | 110 | 83.9 | Plus |
FMO09336.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:13 Download gff for
FMO09336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11294-RA | 156..859 | 1..710 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:21 Download gff for
FMO09336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11294-RA | 87..790 | 1..710 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:41 Download gff for
FMO09336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11294-RA | 153..856 | 1..710 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:41 Download gff for
FMO09336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8693257..8693468 | 1..215 | 97 | | Minus |
| X | 8692255..8692746 | 216..710 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:21 Download gff for
FMO09336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8586288..8586779 | 216..710 | 96 | <- | Minus |
| arm_X | 8587290..8587501 | 1..215 | 97 | | Minus |
