FMO09338.5prime Sequence
1023 bp (863 high quality bases) assembled on 2010-10-13
> FMO09338.5prime
CAGTCGACATGAATCTGCCGGAACGCAGCCGTTTTGTGATCTACGCCGTC
GGTATCTTCGTATGCTACTTCTTGTACGGAATTGTCCAGGAGAAGTTGAC
GCGGGGCCGCTACGGCGAGGAGGTACAGACAGATGGATCCGTGGGAGAGC
GCTTCACTTACGCCTTGGCCCTTGTTTGGGTGCAGTGCCTCTGCAACTAT
GTGTTTGCCAAGGTGCTGCTGACCATTAGGCCGCAAAAGGAGGACACCAC
CAACGCGGGCTCCTACGTGGCCTGTTCGCTGACCTATCTTCTGGCCATGG
TCTCCACCAATATGGCCATGCGCTGGGTTCCCTATCCCACTGCTGTGGTG
GGTAAATCCGCCAAGCCCATCCCCGTCATGATCCTGGGCGTGCTGATTGG
TCGCAAATCCTACAGCTGGACGCGCTATGTTTGTGTATTGACCATTGTCC
TGGGAGTTATTCTCTTTATGTACAAGGAGGGCAAGGTGTCCAATTTGCCG
GCTGAGACCACGCTTCTCGGCGAGGTGCTGCTCTTCCTCAGTTTGTCAAT
GGACGGATTGACTGGAGCCGTTCAGGAACGCATCCGAGCGGCCAGCGCGC
CTTCCGGTCAGCAGATGATGAGGGCCATGAACTTCTGGAGCACCCTGATG
CTTGGCGTTGCCATGGTATTTACAGGTGAGGCCAAGGAATTCATGTACTT
CACCATCCGACATCCCGAGGCGTGGACCCATTTATCGCTGATAGCTGTGT
GCGGCGTGCTCGGTCAGTTCTTCATCTTTCTGATGGTGGCCAGCTTTGGA
CCTCTGGCCTGCTCCGTGGTTACGACGACGCGAAAGTTCTTTACCGTCCT
GTGCTCCCGTCTGCTGTTCGAAACGTCCTCGATTGCCCGCCCGTGGCTTG
GAGCTGTCCTGGTGTTCGCCCCCCTCTTTGTGGACCTGCTCGTACCGCCA
GAAAGCGCCCCTCGGCGTATCGCCACAAAAGCTCGCCAGTCGAGGGATAG
CAATCTCGAGGAAAAGAAACTGA
FMO09338.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| meigo-RB | 1868 | CG5802-RB | 525..1534 | 8..1023 | 4645 | 97.6 | Plus |
| meigo-RA | 1512 | CG5802-RA | 169..1178 | 8..1023 | 4645 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21139117..21139584 | 213..680 | 2310 | 99.6 | Plus |
| 3R | 32079331 | 3R | 21139687..21139954 | 673..940 | 1155 | 97 | Plus |
| 3R | 32079331 | 3R | 21138860..21139065 | 8..213 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:43:40 has no hits.
FMO09338.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:18 Download gff for
FMO09338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5802-RB | 517..1533 | 1..1022 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:35 Download gff for
FMO09338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| meigo-RA | 161..1177 | 1..1022 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:55 Download gff for
FMO09338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| meigo-RA | 161..1177 | 1..1022 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:55 Download gff for
FMO09338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21138852..21139065 | 1..213 | 98 | -> | Plus |
| 3R | 21139118..21139579 | 214..675 | 99 | -> | Plus |
| 3R | 21139690..21140030 | 676..1022 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:35 Download gff for
FMO09338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16964574..16964787 | 1..213 | 98 | -> | Plus |
| arm_3R | 16964840..16965301 | 214..675 | 99 | -> | Plus |
| arm_3R | 16965412..16965752 | 676..1022 | 93 | | Plus |
