FMO09339.5prime Sequence
1068 bp (919 high quality bases) assembled on 2010-10-13
> FMO09339.5prime
CAGTCGACATGGAAGAACTGAACATCATATTACAGAAGACCAAAGATAAA
TCAACGCAAAAGGAGCAGGATGAGATTCTGCTGCAGCCCTTTACATACAT
ACAACAGATTCCTGGCAAGCAATTCCGCTCTGAGTTGGCCTTGGCCTTCA
ATCACTGGTTGCTCATACCGGGCGAAAAGTTGGCGCAGATCGGAGACATT
GTGCAGATGCTGCACAATTCCAGTTTGCTCATTGATGATATTGAAGACAA
TTCGATCCTTCGCAGAGGTGTGCCCGTGGCGCATTCCATCTACGGCGTGG
CCAGCACCATAAATGCGGCCAACTATGCACTCTTTCTGGCGCTGGAGAAG
GTGCAGCAGCTGGATCATCCGGAGGCTACCAAGGTGTACACCGAACAATT
GCTGGAGCTGCACCGTGGACAGGGCATGGAGATCTATTGGTGCGACAGCT
TCACGTGTCCATCCGAGTCGGATTACAAGCTGATGACTGTGCGCAAAACT
GGCGGCCTCTTTATGCTGGCCATTCGCCTTATGCAGCTGTTCAGCTCCAA
CAAGGAGGACTATTCGAAGTTGACGGCTATATTGGGCCTGTACTTTCAGA
TACGCGACGACTATTGCAATCTGAGTCTGAAAGAGTACACGGAGAACAAG
AGCTTCGCCGAGGACTTGACGGAGGGCAAGTTCGGCTTCCCGGTAATCCA
TGCGGTTCGCACCCAAAAGCAGGATAAACAGGTTCTACACATATTACGCC
AGCGCACGCACGACATTGAGGTCAAGAAGTACTGCATCACCTTGTTGGAA
AAGCTGGGCAGCTTTCAGTATACACGCAAGGTTCTGGAGTCGCTCGACGC
AGAGCTCGGTCGGAGGTGGCTCGTTTGGGTAGCAATCCGTACATGGACCG
CCTGCTCAACAGCTGCTGTCGTGGAAGAACGAGCGATAGCGCCAGCATCA
TCCAATCGAACAAGATCAATCACAACAACGTCTCACGCAGCAGTCCCCAA
CCAGAAACGGCTCATTTGCATTGCAGCTTTCTATACCATTTCGTTGGTCG
CGCGGGGCCAGGTAATTG
FMO09339.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:43:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qm-RB | 2543 | CG8593-RB | 298..1309 | 9..1020 | 4835 | 98.8 | Plus |
| qm-RA | 1934 | CG8593-RA | 298..1309 | 9..1020 | 4835 | 98.8 | Plus |
| qm-RC | 2507 | CG8593-RC | 519..1273 | 266..1020 | 3550 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7351465..7351727 | 373..635 | 1300 | 99.6 | Plus |
| 3L | 28110227 | 3L | 7348861..7349017 | 73..229 | 785 | 100 | Plus |
| 3L | 28110227 | 3L | 7351269..7351414 | 230..375 | 730 | 100 | Plus |
| 3L | 28110227 | 3L | 7351971..7352100 | 739..867 | 600 | 99.2 | Plus |
| 3L | 28110227 | 3L | 7351793..7351897 | 634..738 | 525 | 100 | Plus |
| 3L | 28110227 | 3L | 7352233..7352388 | 864..1020 | 520 | 93 | Plus |
| 3L | 28110227 | 3L | 7348610..7348675 | 9..74 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:43:44 has no hits.
FMO09339.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:18 Download gff for
FMO09339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qm-RA | 288..1316 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:36 Download gff for
FMO09339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qm-RA | 290..1318 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:57 Download gff for
FMO09339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qm-RA | 290..1318 | 1..1027 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:57 Download gff for
FMO09339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7348602..7348675 | 1..74 | 94 | -> | Plus |
| 3L | 7348863..7349017 | 75..229 | 100 | -> | Plus |
| 3L | 7351269..7351413 | 230..374 | 100 | -> | Plus |
| 3L | 7351467..7351727 | 375..635 | 99 | -> | Plus |
| 3L | 7351795..7351897 | 636..738 | 100 | -> | Plus |
| 3L | 7351971..7352098 | 739..865 | 99 | -> | Plus |
| 3L | 7352235..7352397 | 866..1027 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:36 Download gff for
FMO09339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7341702..7341775 | 1..74 | 94 | -> | Plus |
| arm_3L | 7341963..7342117 | 75..229 | 100 | -> | Plus |
| arm_3L | 7344369..7344513 | 230..374 | 100 | -> | Plus |
| arm_3L | 7344567..7344827 | 375..635 | 99 | -> | Plus |
| arm_3L | 7344895..7344997 | 636..738 | 100 | -> | Plus |
| arm_3L | 7345071..7345198 | 739..865 | 99 | -> | Plus |
| arm_3L | 7345335..7345497 | 866..1027 | 92 | | Plus |
