FMO09341.5prime Sequence
1113 bp (1001 high quality bases) assembled on 2010-10-13
> FMO09341.5prime
CAGTCGACATGCAGTTTGTGGCCAGTGAGCACCCGCACCGACGTCTAAAT
CCGTTGAACGGCCAATGGGTCCTAGTGTGCCCACATCGCACCCAACGCCC
TTGGTCGGGTCAGCAGGAGAAGGCGCAGAAGAACGAGCTGCCCGAATTCG
ATCCCACCAATCCTCTGTGCCCTGGCGTCACCAGACCCAATGGAATCCAA
ACTCCGGAATATGAGAGCACCTATGTGTTTGAGAACGACTTCCCGGCCCT
GGTGGAGGTGGTGCCCGTTCCGCCCAACAACGATGATCCACTGTTCCAGA
TAGCTCCCGCCCGTGGCAACTGCCGAGTGATGTGCTTCCATCCCAAATCG
AATCTGACTTTGCCCACGATGAGTGCAGCGGAAATCGTCGTTGTTATCGA
CGAGTGGATCAGCCAGTTCAACGAGCTTAGCGCCAAGTACGCGTGGGTGC
AGATATTCGAGAACAAGGGAGCCGCCATGGGGTGTTCCAATCCCCATCCG
CACTGCCAGATCTGGTCATGCTCGTTTCTGCCGACGGAACCGCAACTGAA
GCAGGAGCGTCTGCGTGCCTACTACGCCACCAACGAGCGGCCCATGCTGG
CCGACTATGTGGAGCGTGAGCTGCAGCGCCAGGAGCGGATTGTCATTGAG
AATCGCGACTGGTTGGTGGTGGTGCCCTTCTGGGCCACTTGGCCCTTCGA
AACCATGCTCATCTCACGCAACAACAATAAGCGGATCAATGATCTTACCG
CAGAACAGCGATACAACTTGGCGCTGACCATAAAGGAGCTGACCACCAAG
TATGACAATCTGTTCCAGTGTTCATTCCCCTACTCGATGGGTTGGCATGG
AGCACCGACTGTGCCGGAGCATGCCCACGCATCCAGTGCTCATTGGACCC
TGCACGCCATCTACTATCCGCCGCTGCTTCGTCTGCCTCCGTGCGCAAGT
TCATGGTGGGATTTGAGCTGCTGGCCATGGCCCAGCCGGGATCTGACTCC
CGACAGCAGTCCAAAGTTTGCGGGAGGTCGAATGGAAAGTGTCATATCTA
GAAGAAGCCAGCTTTCTTAGAACATTCGGTTGGCGCGCCGGTCCAGTAGA
TGGTCATATCTAA
FMO09341.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:43:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Galt-RB | 1459 | CG9232-RB | 345..1390 | 9..1052 | 5045 | 99.1 | Plus |
| Galt-RA | 1484 | CG9232-RA | 345..1390 | 9..1052 | 5045 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6666366..6667008 | 1045..404 | 2935 | 98.4 | Minus |
| 2L | 23513712 | 2L | 6667084..6667291 | 405..198 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 6667361..6667531 | 197..27 | 855 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:43:48 has no hits.
FMO09341.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:19 Download gff for
FMO09341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9232-RA | 336..1392 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:39 Download gff for
FMO09341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galt-RA | 338..1394 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:00 Download gff for
FMO09341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galt-RA | 338..1394 | 1..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:00 Download gff for
FMO09341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6666354..6667008 | 404..1057 | 98 | <- | Minus |
| 2L | 6667086..6667291 | 198..403 | 100 | <- | Minus |
| 2L | 6667361..6667530 | 28..197 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:39 Download gff for
FMO09341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6666354..6667008 | 404..1057 | 98 | <- | Minus |
| arm_2L | 6667086..6667291 | 198..403 | 100 | <- | Minus |
| arm_2L | 6667361..6667530 | 28..197 | 100 | <- | Minus |
