FMO09343.5prime Sequence
1053 bp (977 high quality bases) assembled on 2010-10-13
> FMO09343.5prime
CAGTCGACATGGAAGCAAATTTGGAGAACGGTCAGAAAACGATCGCCTCG
ACAAGCAAATCGCATTCGCAGCGTCAAACAACATCTCGACGGCGGCAAAA
CGACAGCGATGTGGCCGGAGGCGTGGGAATCACCGGTGGGGGAGTCGTCA
TTTTGCCGCAGCACGTGCTTAACGAACTCTACCACAACTACTCCATCAAA
CAACGCCGCAGTGGATTGAAGTGGTTTGTCTTTGCGGCCGCGTTGTTTAA
CATATGGACCATCGGAATTCCCTGGGATCAGTCGGCCCCTACGAGAGTGA
TCAACTGTTGTATGCTGTTAGCTTACTTGGCATTGACAGCGCTCCTTCAT
ATTGGACGCCGTTCTGATAAACCGGCACTGAGGCGCTTCCACCAAATACT
CCTGATTATTGTGCCACGGGCACTGTGGCTATTAAGCATTCTTCATTTTA
CCGTTTATGTTATTCTGCAGCCTAGTTTTTCTCCAAGGGACCTACTTGGC
TGGGCCATCCTTCTAAATTTCTTGGTCTATGTGACGCTGCCATTACAGCT
GATTTTTCTTGGTCTGTCGATTGGATGTATCACATATTTCATTTGCCTCA
GTCTCCCTGTTGGTTATTCTCACTGGGACTCGCTGCTCTCGAACCAATTA
GCGGCTAATGCAGTTTTGATAGCCACGGCAGCGCTGATAGGCCTTTTGTA
CTACTTTATGGGTGAGGCCAAGCAGAAACGAGCCTTTCTCGAGGCCAAAA
AGAGCCTTGAAGTTAAAATGGTCATAGAGGACAGTCGGCCGAACAGGAGC
GTCTGCTATTGTCTGTGCTGCCAAAGCATGTGGCTATTAAGATGCGGGAA
GATTTGGGATCATCCAGTTCCGAGGCTTTTAAAAAATTTACATGAGTCGG
CACGAGAATGTAAGAAATATCAACAATTGCGCATTAGATTCTTGGCGATT
GCTACTACTGGTATTAGCGGGGCCCCTTGATGAGCGTCCAGATCACGCCG
GTCCTGGTGTGGTGCACCTTGGGACTCTCCATGTGCAAGCTTTCTATAAC
AAT
FMO09343.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:43:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ac3-RC | 2126 | CG1506-RC | 409..1434 | 5..1033 | 4890 | 98.8 | Plus |
| Ac3-RA | 5055 | CG1506-RA | 409..1320 | 5..914 | 4495 | 99.7 | Plus |
| Ac3-RA | 5055 | CG1506-RA | 1431..1546 | 913..1033 | 405 | 92.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21634724..21635036 | 486..797 | 1515 | 99.7 | Plus |
| 2L | 23513712 | 2L | 21633623..21633915 | 5..297 | 1450 | 99.7 | Plus |
| 2L | 23513712 | 2L | 21634418..21634610 | 296..488 | 965 | 100 | Plus |
| 2L | 23513712 | 2L | 21635090..21635210 | 795..914 | 555 | 99.2 | Plus |
| 2L | 23513712 | 2L | 21637657..21637743 | 913..1000 | 280 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:43:55 has no hits.
FMO09343.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:20 Download gff for
FMO09343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ac3-RC | 115..1150 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:42 Download gff for
FMO09343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ac3-RC | 405..1440 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:04 Download gff for
FMO09343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ac3-RC | 405..1440 | 1..1039 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:04 Download gff for
FMO09343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21633619..21633915 | 1..297 | 98 | -> | Plus |
| 2L | 21634420..21634609 | 298..487 | 100 | -> | Plus |
| 2L | 21634726..21635035 | 488..796 | 99 | -> | Plus |
| 2L | 21635092..21635210 | 797..914 | 99 | -> | Plus |
| 2L | 21637659..21637778 | 915..1039 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:42 Download gff for
FMO09343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21633619..21633915 | 1..297 | 98 | -> | Plus |
| arm_2L | 21634420..21634609 | 298..487 | 100 | -> | Plus |
| arm_2L | 21634726..21635035 | 488..796 | 99 | -> | Plus |
| arm_2L | 21635092..21635210 | 797..914 | 99 | -> | Plus |
| arm_2L | 21637659..21637778 | 915..1039 | 91 | | Plus |
