FMO09344.5prime Sequence
665 bp (-89 high quality bases) assembled on 2010-10-13
> FMO09344.5prime
CAGTCGACATGCGTAAGACGTGGGTGAAGCGAGAGAATATATACTTCAAG
CCCTTCTACAAGCAGAAGTCGAAGATGTTCCTGCTGCTGATCTTCCTGGT
CGGAATTTCGTTCATCGCGTATCAGGCCTTCTCGCTGAACCAGCTGCCCG
GAGTGCCTGCTCCGTGGAATCTGCAGCAGATCAAGCGCAAGCACCATCAG
ATGATGCAGTCCCTGGGCAGCAAACAGCGCGACGTGGACGATTTCGATGG
CGGAGGCGCCGATGCAGTTGCTCCGGCAGGCGGGGAAACCTCACCTGTTG
CGGGTCACGAGGATCCCATCAAGATTGTCAGGGGCACACGGCTCTTCGAC
TACTACGCCTACAAGCCCAACTTCGAGGGCAAGTTCCGGTGTCTGGACGG
CTCCAAAGAGATCCCGTTCGACCACCTGAACGACTACTACTGCGACTGTG
AGGAGGACGGCAGCGACGAGCCCAGCACGAATGCCTGCGCCAAGGGGCGA
TTCTACTGTCGCTACCAGAAGCGTCACATCACGGGCCGGGGCCTGGATAT
CTACGTGGCCAGCAGCCGCATTAATGACCACGTGTGCGACTGCTGCGACG
GCAGCGATGAGTGGAGCACGGCGACCAAGTGTCCCAACGACTGTGCGGCA
AGCTTTCTAGACCAT
FMO09344.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:43:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7685-RA | 940 | CG7685-RA | 104..742 | 9..647 | 3150 | 99.5 | Plus |
| CG7685-RB | 922 | CG7685-RB | 104..724 | 9..647 | 2870 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18405487..18405804 | 330..647 | 1560 | 99.4 | Plus |
| 3R | 32079331 | 3R | 18405218..18405426 | 124..332 | 1030 | 99.5 | Plus |
| 3R | 32079331 | 3R | 18405043..18405160 | 9..126 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:43:58 has no hits.
FMO09344.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:20 Download gff for
FMO09344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7685-RA | 34..672 | 9..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:43 Download gff for
FMO09344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7685-RA | 104..742 | 9..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:06 Download gff for
FMO09344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7685-RA | 104..742 | 9..647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:06 Download gff for
FMO09344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18405043..18405159 | 9..125 | 100 | -> | Plus |
| 3R | 18405220..18405425 | 126..331 | 99 | -> | Plus |
| 3R | 18405489..18405806 | 332..652 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:43 Download gff for
FMO09344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14230765..14230881 | 9..125 | 100 | -> | Plus |
| arm_3R | 14230942..14231147 | 126..331 | 99 | -> | Plus |
| arm_3R | 14231211..14231528 | 332..652 | 98 | -> | Plus |
