FMO09345.5prime Sequence
1079 bp (945 high quality bases) assembled on 2010-10-13
> FMO09345.5prime
CAGTCGACATGCCGTTGCAGGCCGCCAATGTCCAGGAGCAGCAGTCTTCT
CCGGTGGCTTTATATCCGACATCGGCCTCCCCGGTGGCTGTTCAATCGCC
ACAGGACGCATTTTTGGCTGTTCAGTCGCCAGGGGCTCCTGCCCCCGTTC
AACTGGCCAACTCGTCCGACCAGCAGAATAATCCGGATGCGGACGCCATT
GCCTCCAAACTGCCCATGCCAGTTATCATCAAGGAGGAGCCGATCTCTGT
CAACGATGAACCGTCCGTCGACAATATAGAGGACAATACCAGTGCCAGTA
CCAGTGCCAGCGGCATCGGGGGCAAGATCCCATTTAAAAAAATCTTCCAA
AAGCGCAAGAAGTCGTCTGAACGCACTCGGGACAAGAAGTTGCGACAGAA
CCGCCAGCTGCGCAAGTCCATGCTCCCCAAGAATGCTCTGATGGCCCTCA
ACGAGGTGAAGGGCGTGACCATCAGCGATTTCACCATCGACAGCAATACC
GACGGGGGATTCACGGCCGTTGTCACTGTCAACTCGAATCAGTACGAGGG
CAAGGGTACCTCGAAAATGACAGCCAAGAACGCGGCCTGCGAGAAGGCTT
GGCGCGATTTTATTATTGCAAAAATGACCCCCAAGCCGCCCCGTATTCAC
CAGGTGGAGATGGGTTCGGAGCCAATGGATATCAACGAGGATGAGGCCGA
TGCACCGGATGATGATCTGCCCATGTTGAATCTGGCCTCGTTTGCCATCT
ACAAGCTGTTCGCGGAGTGGGAACGGGAGGGCTATGTCGTGCCCGAGATG
CACCCTTCGGCCAATGCTGCCCAACAGGCGGGAGGGGATGCCGGACTCCA
GTTCCCCCCGTGCCGAAGAGCCAAAGAAGCCGCCAGTGCGCACCGAGCTA
CCCTCTGGCTGGGAGACCATGCACCCGGCGACCATTCTTTGCATTATGCG
TCCCGGGACTCACCTACGTGGACTACTGGGTCATCTTGGCGAACAGACCA
CGGCATGCAGCATCTTGTGTATCATGGTTGACACTCAGGAGTTCCTCGCC
CACCGGCGAATCAATGAAATCGCTCCGTC
FMO09345.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DIP1-RI | 3477 | CG17686-RI | 1082..2150 | 9..1079 | 4915 | 97.8 | Plus |
| DIP1-RG | 3195 | CG17686-RG | 1154..2222 | 9..1079 | 4915 | 97.8 | Plus |
| DIP1-RE | 3823 | CG17686-RE | 1428..2496 | 9..1079 | 4915 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21626313..21626891 | 945..369 | 2780 | 99.5 | Minus |
| X | 23542271 | X | 21628361..21628721 | 369..9 | 1805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:44:01 has no hits.
FMO09345.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:21 Download gff for
FMO09345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DIP1-RE | 1431..2461 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:46 Download gff for
FMO09345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DIP1-RE | 1431..2461 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:08 Download gff for
FMO09345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DIP1-RE | 1421..2451 | 1..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:08 Download gff for
FMO09345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21628361..21628727 | 1..369 | 98 | | Minus |
| X | 21626313..21626890 | 370..945 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:46 Download gff for
FMO09345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21499388..21499754 | 1..369 | 98 | | Minus |
| arm_X | 21497340..21497917 | 370..945 | 99 | <- | Minus |
