FMO09346.5prime Sequence
884 bp (884 high quality bases) assembled on 2010-10-13
> FMO09346.5prime
CAGTCGACATGGCATTGCCGAAGAAAATTAAATGTTTTAAGTATTTGGTT
TACAGTTATGTGGTGCTCCTAGCGCTGACTGGAGCTGCGCAGATCTTCCT
GGGCACATCCCTGCTCTGGGGTCACTCGGTCTACTATGGAATTGTGCAGA
ACAAGCTGTGGGCTCCGGCCGCGATCCTGCTTTGCCTGGGACCCGTCACC
TTCATCCTCTGCTGGATGGGCTGCCAGGCCACCAATCAACGCAAGCGATG
CCTGCTGGGAATGTTTGCCGCCCTTTTGGTTGCCTGCATCTGTGTTCAGT
TCATCATCTGCGGCTGGTCGCTGGCCATGAGGGAGAACCTGCCCACTTCC
GTGGAGATCTTCATCGACGACTCCTTTGTCGAGTTCTTAGACAAGTTTTC
GCGCACCAAGGTGGATAACCTACATCTGTGGAATAGGATGCAGTCGCAGT
TGCAATGCTGCGGCGTCGACGGACCTCTCGATTACCGCCGACTTTCGCTG
CCCTGGTCCTGCTGCTCGCGCCCGGAGCACGCCTACGAGTCAGCATGTGA
TACCCACTACAAGCGCGGATGCCTGGCCGTCGTATCGGAGCAGATCAGGA
ACCGCCTGCTGATCACCGCCTTCGGAGCTGCCATCATAGCCATATTCCAG
AGCCTGGGAATCTTCTGTGCTGTCCACCTGACCATTCTGTTCGGCAAGAA
CGACAACACCCATCCCATGAACATGAACCGGAAAAAGAAGCAGCAGCAGT
TCTTGCCCCTGACCATACAGGACAAGAGGCACGACATGCCCTCGCCCATC
AATCTATCCCCTTCAGCACCCGGGCAGCGGGTTTTAAAAACTGCTCTGCC
CTCGGCCATGCACAAAGCAAGCTTTCTAGACCAT
FMO09346.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TM4SF-RC | 1768 | CG11303-RC | 697..1554 | 9..866 | 4290 | 100 | Plus |
| TM4SF-RA | 1458 | CG11303-RA | 387..1244 | 9..866 | 4290 | 100 | Plus |
| TM4SF-RB | 2123 | CG11303-RB | 1117..1909 | 74..866 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23880428..23880646 | 648..866 | 1095 | 100 | Plus |
| 2R | 25286936 | 2R | 23880152..23880354 | 448..650 | 1015 | 100 | Plus |
| 2R | 25286936 | 2R | 23879623..23879812 | 74..263 | 950 | 100 | Plus |
| 2R | 25286936 | 2R | 23879874..23880060 | 263..449 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 23878893..23878958 | 9..74 | 330 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader1 | 4032 | invader1 INVADER 4032bp | 3434..3477 | 8..51 | 112 | 72.7 | Plus |
FMO09346.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:16 Download gff for
FMO09346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TM4SF-RA | 432..1292 | 2..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:31 Download gff for
FMO09346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TM4SF-RA | 384..1244 | 2..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:50 Download gff for
FMO09346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TM4SF-RA | 384..1244 | 2..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:50 Download gff for
FMO09346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23878890..23878958 | 2..74 | 94 | -> | Plus |
| 2R | 23879624..23879812 | 75..263 | 100 | -> | Plus |
| 2R | 23879875..23880060 | 264..449 | 100 | -> | Plus |
| 2R | 23880154..23880354 | 450..650 | 100 | -> | Plus |
| 2R | 23880431..23880646 | 651..866 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:31 Download gff for
FMO09346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19767677..19767877 | 450..650 | 100 | -> | Plus |
| arm_2R | 19767954..19768169 | 651..866 | 100 | | Plus |
| arm_2R | 19766413..19766481 | 2..74 | 94 | -> | Plus |
| arm_2R | 19767147..19767335 | 75..263 | 100 | -> | Plus |
| arm_2R | 19767398..19767583 | 264..449 | 100 | -> | Plus |
