FMO09347.5prime Sequence
1092 bp (960 high quality bases) assembled on 2010-10-13
> FMO09347.5prime
CAGTCGACATGTTTGACAACGCGATTAAACCTCATCCGGAGGCCAATGGA
GCTCCAATAAATGCAGGAGATCGGCCGATAACTACTGTCATTAATATTGA
ACCAGAACCAGAAACCGAAAGTCCAATTGGGATCTTCACATCACAACCGG
AAAGTCAACAACAACAACCCGAGCAGCTCCAATCCGAATCCGAGTCCGAC
AGAATGGCCAATTTTGACGATACGTTGCAACGCGCCCGCCTTGCCTTTTC
CAGTGGAAAGACCAGGAATGTCAGCTTTCGACGCAAGCAGCTGGAGAATT
TGCTGCGTTGCTATGAGGAGCACGAGAACGAGATCATCAGCGCCTTGGAG
GCGGATCTGCGACGTCCCAAGCAGGAGAGCCTCATCGTGGAAACGGAATT
CATGAAGAACGACATCAGGCACATCCTATTTTAGCTCGACGAGTGGGTGC
AGTCGGAGAAGCCGCCCAAGTCGTTTGTGAACATGATGGACGACGTCCAG
ATCTACAATGACCCCTTCGGAGTGGTTCTGGTGATCGGCGCCTGGAACTA
CCCGCTGCAGCTGCTGCTCGTGCCAGTGGCTTCCGCCATCGCCGCCGGAA
ACTGTGTGGTGATCAAGCCCAGCGAGATTGCCGCCAACTGCGCCAAGTTC
ATTGCCGATGTCATTCCAAAATATTTGGATAATGATTGCTATCCAGTTGT
CTGCGGTGGACCCAGCGAAACGGCGGAGCTGCTCAACCAGCGTTTCGACT
ACATCTTCTACACGGGCTCCACGCGCGTAGGCAAGATTATCCACGCCGCG
GCCAACAAGTACTTGACCCCCACCACCTTGGAGCTGGGTGGCAAAGCCCC
TGCTACATTGACAAATCTGTGGACATGCGCACTGCGGTCAAGCGCATCCT
GTGGGGCAAGCTGATTAACTGGGGAAAGACCTGCATCCCTCCGGACTACA
TCCTCTGCTTCAAGGAGTAACTACGAATGCAGCGAGCGTTCATCGATCCA
CCATCTTGGTGGACGCAAGCTTTCTAGAACATTCGTTTGGGCCGCGTGCC
AGGTTGTGGGTCGAAATCCTATCTAATCTAAATCCTATCACA
FMO09347.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aldh-III-RO | 2448 | CG11140-RO | 340..1299 | 9..967 | 4685 | 99.3 | Plus |
| Aldh-III-RN | 2352 | CG11140-RN | 244..1203 | 9..967 | 4685 | 99.3 | Plus |
| Aldh-III-RQ | 2923 | CG11140-RQ | 982..1944 | 9..967 | 4645 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7470393..7470617 | 684..460 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 7470702..7470883 | 461..280 | 880 | 98.9 | Minus |
| 2R | 25286936 | 2R | 7469911..7470072 | 845..684 | 810 | 100 | Minus |
| 2R | 25286936 | 2R | 7473722..7473844 | 221..99 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 7469725..7469847 | 967..845 | 555 | 96.7 | Minus |
| 2R | 25286936 | 2R | 7473288..7473346 | 280..222 | 295 | 100 | Minus |
| 2R | 25286936 | 2R | 7475440..7475494 | 63..9 | 275 | 100 | Minus |
| 2R | 25286936 | 2R | 7475342..7475378 | 99..63 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:43:32 has no hits.
FMO09347.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:16 Download gff for
FMO09347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RJ | 972..1997 | 1..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:32 Download gff for
FMO09347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RN | 234..1203 | 1..967 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:52 Download gff for
FMO09347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RN | 234..1203 | 1..967 | 98 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:52 Download gff for
FMO09347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7470394..7470615 | 462..683 | 100 | <- | Minus |
| 2R | 7470702..7470882 | 281..461 | 98 | <- | Minus |
| 2R | 7473288..7473346 | 222..280 | 100 | <- | Minus |
| 2R | 7473722..7473843 | 100..221 | 100 | <- | Minus |
| 2R | 7475342..7475377 | 64..99 | 100 | <- | Minus |
| 2R | 7475440..7475504 | 1..63 | 93 | | Minus |
| 2R | 7469725..7469845 | 847..967 | 96 | <- | Minus |
| 2R | 7469909..7470072 | 684..846 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:32 Download gff for
FMO09347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3357230..3357350 | 847..967 | 96 | <- | Minus |
| arm_2R | 3357414..3357577 | 684..846 | 99 | <- | Minus |
| arm_2R | 3357899..3358120 | 462..683 | 100 | <- | Minus |
| arm_2R | 3358207..3358387 | 281..461 | 98 | <- | Minus |
| arm_2R | 3360793..3360851 | 222..280 | 100 | <- | Minus |
| arm_2R | 3361227..3361348 | 100..221 | 100 | <- | Minus |
| arm_2R | 3362847..3362882 | 64..99 | 100 | <- | Minus |
| arm_2R | 3362945..3363009 | 1..63 | 93 | | Minus |
