FMO09348.5prime Sequence
919 bp (919 high quality bases) assembled on 2010-10-13
> FMO09348.5prime
CAGTCGACATGAACAAGGTCGAGTTCAAAAACAAGAACAAGGATCAGGGA
CCCTGCGCCCGCGTGCGTAAGATTCGTCCAATTAACATGGGCGGCAACGT
GGAGCAGCGTCCTTGGACTCCAACTGTTAGGATCGGCAAGATCGCCGCCG
AGACCACCAATCCGGGTCCAGCCACTGTCCAACTTCCAACCTTGATAGGC
AGCAAAGTTCCCGACTCCAAGAAGAAGGCCGCACCCTCGTACTCCTTTGG
CCACAAGTTGGGCGGAAAGTATGACACCTCCGGACCGGGTCCGGCGCAGT
ACAATGTTACGGGTATGCGAGCCAAGGGTCGGGATTATCCTCGAGCAGCC
ACTCTGCAGAGCAGACCCAAGGAACTAACACGCTTCTCGAATCCCGGACC
TGGGGAATACGATGTGGTGCCGGCGGCCAAGGTGGTGATCGATGCCACGC
CCAAATACACTTTTGGCCAACGGCCGGTCGCGTTGAAAACCTTCCAGATA
CCAGCTCCTAATGTCTACAAAATACCGACCGTCATGGGCAGCAGCAAGGA
GGGCAAGATTCGTTCGGCTCCGGCTTATACGATTACGGGTCGGGAGAAGC
CTCCGCTGATTCCGGTGATGATCTTCCCCGGACCCGGTTACTACGACGGC
GAGTACACGGTGGTCAAACCAAAGCCACCAGTCTTCTCCATGCGCGGCAA
GTACAAGATGGGCAGCGAGGACTCGAAGCCCGGACCCGGAGCGCACTGTC
CGGAGAAGTACTGGGAGAAACGTTCGCCTCCTGCCATATCCTTTGGCATC
CTGCACTCCCCCTATATCAAGAAACCATTGCCAGTCAACGTTCCGCAGCG
TTGTGTTCGCTCTTTGTTGGAGATCGGGCGGACAAGCCCTACGATAATAT
TGCAAGCTTTTTAGACCAT
FMO09348.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8086-RB | 1053 | CG8086-RB | 116..1009 | 9..901 | 4430 | 99.8 | Plus |
| CG8086-RA | 1354 | CG8086-RA | 425..1310 | 17..901 | 4390 | 99.8 | Plus |
| CG8086-RK | 1508 | CG8086-RK | 425..1166 | 17..758 | 3695 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8252228..8252536 | 504..196 | 1530 | 99.7 | Minus |
| 2L | 23513712 | 2L | 8244970..8245226 | 758..502 | 1285 | 100 | Minus |
| 2L | 23513712 | 2L | 8252594..8252777 | 199..16 | 920 | 100 | Minus |
| 2L | 23513712 | 2L | 8244589..8244734 | 901..757 | 680 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:43:36 has no hits.
FMO09348.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:17 Download gff for
FMO09348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8086-RB | 109..1009 | 1..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:33 Download gff for
FMO09348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8086-RB | 109..1009 | 1..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:54 Download gff for
FMO09348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8086-RB | 109..1009 | 1..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:54 Download gff for
FMO09348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8244589..8244732 | 759..901 | 99 | <- | Minus |
| 2L | 8244970..8245223 | 505..758 | 100 | <- | Minus |
| 2L | 8252228..8252533 | 199..504 | 99 | <- | Minus |
| 2L | 8252595..8252777 | 16..198 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:33 Download gff for
FMO09348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8252228..8252533 | 199..504 | 99 | <- | Minus |
| arm_2L | 8252595..8252777 | 16..198 | 100 | | Minus |
| arm_2L | 8244589..8244732 | 759..901 | 99 | <- | Minus |
| arm_2L | 8244970..8245223 | 505..758 | 100 | <- | Minus |
