FMO09352.5prime Sequence
1048 bp (766 high quality bases) assembled on 2010-10-13
> FMO09352.5prime
CAGTCGACATGGCCAACTCCAAGCGAAAGCTGCCCACGAAACCCAGTGCC
ACAGAGGACGCTACTCCGCACAAAGATACACCTAGGTCGTCGGAAGAATT
CCCCACAGATGTAAATCACAAGAGTGCCAAGAAGTCCTTCCTTCCTCAAA
ACGCATTCTTTCGAGATTGCCTCGGTCACGATCTGAGCAACTTCACTAGC
CTGACCAACTTTACCAGCTGGCTAAACAGACCCGTAGATGGAGCTGCCCT
GGGCATCTTCCGTCTGCTCTACGGAGCAGCCATGCTGATTGACATCGCAG
AGGAGCGAGGTGGCGGCCAGCTGGACGTGCGGTTTCAGGAGCCGCTACAC
TGCCACTTTCCACTGTTCAACGGGATGCGAGCATTGGACTATCCACTGAT
GGGCTGCGTCTATCTGTGCATGTGGCTGGGCGCGTGGGGCATCATGCTGG
GCTATCGATTCAGGACTAGCTGCCTGGCCTTCCTGATACCCTACTGGTAC
ATCTTCCTGCTGGACAAACCGACGTGGAATAACCACAGCTATCTATTCGG
CCTGGTGGGAACATTGCTGCTCTTCACTCAAGCGGAGTCCTACTGCTCCC
TGGACAGATGGCTAAATCCCCGAAAGAGTCACTGTATTCCCTACTGGAAC
TACTTCCTAATCAAATTCCAGTTCTTCATCCTGTACATGTACGCAGGTCT
GAAGAAATTCTCGCTGGAATGGCTATCGGGATACGCGATGTCCAATCTGA
GTTACCACTGGGTCTTTGCCCCGTTCCGGCAAGTGATTGATCCGGAGCTG
ATAGACCTGCTCATCGTGCATTGTTCACCGCCTTTCTTCGACGTGTCCAT
TGCTTTTTTCATGACTCTGGAAAGACGCGCCTTCTGGTCACTCCTTTTAT
GCTCATGTTTCATGTAATGAACTCCCGACTGTTTGTAATAGGTATGTTTC
CCTGGGTTGTTTGTCCGAAGTGCCGCTCCTTCTTTCACTTTCGACTTGCC
CAAGAAGGCTAAGTCTGTGGTCCCAAAATTACAGGAACGTCTCTCCCA
FMO09352.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GC-RB | 2382 | CG13927-RB | 30..1021 | 9..1000 | 4645 | 98.2 | Plus |
| GC-RA | 2673 | CG13927-RA | 321..1312 | 9..1000 | 4645 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1625075..1625661 | 595..9 | 2920 | 99.8 | Minus |
| 3L | 28110227 | 3L | 1624660..1625017 | 951..595 | 1540 | 97.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:44:17 has no hits.
FMO09352.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:23 Download gff for
FMO09352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GC-RA | 311..1309 | 1..1000 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:55 Download gff for
FMO09352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GC-RA | 314..1312 | 1..1000 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:15 Download gff for
FMO09352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GC-RA | 314..1312 | 1..1000 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:15 Download gff for
FMO09352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1624670..1625016 | 596..941 | 97 | <- | Minus |
| 3L | 1625075..1625668 | 1..595 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:55 Download gff for
FMO09352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1624670..1625016 | 596..941 | 97 | <- | Minus |
| arm_3L | 1625075..1625668 | 1..595 | 99 | | Minus |
