FMO09353.5prime Sequence
1109 bp (990 high quality bases) assembled on 2010-10-13
> FMO09353.5prime
CAGTCGACATGCTTAAAGGTGTTCCCACGCTAGCCGGTCGAAACCTTCGT
CTCCTGACGACCCAGGCACAGGTGCTGGTCCATCAACGCGCCAAAGCGTC
CGCCGCCGAGCCCGTCGAGGACTTTGACCAGGAGACGGATCTTTTGAAGC
GCGCCAAGTTCGGACACACGGGCAAACAGCTGCAGCAGAAAATAATCAAT
GAGAAAAATCTGCGCGCTCCACCGCTTATGAACTTGGTGTTTGCCAATCG
GAAGTTGTCCTTCTACGATACCAGTTCCACTCCCAAGACCAAAGAGGATA
ATGCCAAGCTCCATCGCGAGCAGGAGCAGCGAAATGCGGAGGATGTGCTA
TTCGACATGTTCGCCAGCGAGGAGACGGGCCTCATCTCGATGGGCAAGTT
CCTGGCCGGGCTAAAGACCACCGGAATTCGCCGGAATTATCCGCGAGTGC
GAGAACTGATGGACAACTTGAAGAAAGTGCACAAGCTAAATAACTACGAG
ACGGGTTCTTCGGCGGAAACTCAGCATCTCAATCGAGAGACCTTCAAGGC
TGTGGTTGCCCCCAATATTGTGCTGATTGCCAAGGCCTTCCGGCAGCAGT
TCGTTATTCCCGACTTTACGAGTTTCGTCAAGGACATCGAGGATATTTAC
AATCGCTGCAAGACCAACACTTTGGGCAAGTTGGCCGACTACATTCCGCA
GCTGGCTCGCTATAATCCCGATTCCTGGGGCCTGAGCATCTGCACGATTG
ATGGCCAGCGCTTCTCCATCGGCGATGTGGATGTGCCCTTCACACTCCAG
AGTTGCAGTAAGCCGCTGACCTACGCCATTGCCCTGGAGAAACTGGGTCC
CAAAGGTCGTGCACTCTTATGTGGGCCAGGAGCCGAGTGGCAGGAACTTC
ACGAACTTGTTCTGGATCAGAACAAAAAGCCACACCAATCCGATGATCAA
CGCTGGGGCCATTCTGACGTGCTCCCTGATGACGCCCTTTGTTCAGCCGG
ACATGAACCTCCGCCTGGAGATCTTCCGAACTACCCATTGTTCTTGGTCT
AACGCTGTCTAGCGGGAGAAGATATTATCGGTCTTTATATTGCCGTATTT
CTGTCCCTA
FMO09353.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RH | 2620 | CG42708-RH | 192..1280 | 9..1106 | 4845 | 97.2 | Plus |
| CG42708-RA | 3005 | CG42708-RA | 192..1280 | 9..1106 | 4845 | 97.2 | Plus |
| CG42708-RJ | 2303 | CG42708-RJ | 70..963 | 204..1106 | 3870 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12672664..12673037 | 924..551 | 1775 | 99.5 | Minus |
| 2R | 25286936 | 2R | 12673100..12673339 | 550..311 | 1170 | 99.2 | Minus |
| 2R | 25286936 | 2R | 12679208..12679402 | 203..9 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 12676125..12676233 | 310..202 | 545 | 100 | Minus |
| 2R | 25286936 | 2R | 12672507..12672587 | 1006..925 | 255 | 90.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:44:21 has no hits.
FMO09353.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:24 Download gff for
FMO09353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RH | 182..1214 | 3..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:57 Download gff for
FMO09353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RA | 186..1218 | 3..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:17 Download gff for
FMO09353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RA | 186..1218 | 3..1041 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:17 Download gff for
FMO09353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12672664..12673037 | 551..924 | 99 | <- | Minus |
| 2R | 12673100..12673339 | 311..550 | 99 | <- | Minus |
| 2R | 12676125..12676231 | 204..310 | 100 | <- | Minus |
| 2R | 12679208..12679408 | 3..203 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:57 Download gff for
FMO09353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8563630..8563736 | 204..310 | 100 | <- | Minus |
| arm_2R | 8560169..8560542 | 551..924 | 99 | <- | Minus |
| arm_2R | 8560605..8560844 | 311..550 | 99 | <- | Minus |
| arm_2R | 8566713..8566913 | 3..203 | 98 | | Minus |
