FMO09355.5prime Sequence
1095 bp (958 high quality bases) assembled on 2010-10-13
> FMO09355.5prime
CAGTCGACATGACTGTTTGGGGAATAGAAGCCATCACACTGAACGGATCG
TCGGCAAGGGAAAGTTTGGAGCACCTTCCGGGAAACGGTGCAATTCGGGT
GATACCAGAGGCGGGAGCCATGAACTCCGTGGAGCGCTACCGTCAGGAGT
GGCAGGTGCTGCTTGAAAACCTCGATGCGGACCCGGAAAGTCTCCGGCAG
TCGGCATTTGCCGGCGATCTCAAGATGTCCAAATTCCGCAGCGTTCACTG
GGCCCTCCTACTGCGCGTCCTGACGTCGGAGCACCGCAGTTGGACTAGCC
AGCGACTTCAGCAGCGAGTTAGGTACGACAAGTTCCGGGCAGACTACGTC
CGCAATCCGCACCAACTGGCCGTGGACTGCAACGATGATCCGCTGTCGCA
GTCGACGCAAAGCGTGTGGAATCAGTACTTTAGCGACCAGGACCTATTCG
CCGTCATCCGGCAGGATGTGGTGCGCACTTTCCCGGGTGTGGACTTCTTC
CGTAAGCCATTGGTGCAGAATGCAATGGTCAACATACTGTTCTACTACGC
CAGGGAGCATCCGTATATGTGCTACCGGCAGGGCATGCACGAGATCCTGG
CTCCCATTATATTCGTTGTCTACAGCGATCACCAGTCCCTGCTTCACTTC
AGCGAACTGGCCAAAACGGATATTAATCCCACACTGCTGGACGTGCTGGA
TCCCGCCTATCTGGAAGCGGATACCTACTCTTTGTTCTCCCGCCTCATGG
CCTCCGTGGAGTCGTACTATCGCGTCTCGAATCTGGTCTCCACACCCGGT
GGCCACATCGAACAGCGAGCCGAGAGCCCCGGGGACAATGAGACGTCGAC
CGAGGCGGAGGTTATCGGCCAGCTGAACTTCATACGGGACAAAAATACTC
GTCAAGCAGACCAGCCACTTGCCACCACCTATCTCCAAAAGATGGAAATC
CCACTGCACAATATTCGGCATTCGATGGCTAAACTTCTCCTTTTGGACCG
GGAGTTTATGCTGCTGGAACCTGTTGCTACTCTGGGAATGCCATCTTCTC
CAGATAGCGACCGCCTCGGACCTGCCGACAACAATTCTAAAGGCA
FMO09355.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8449-RA | 2318 | CG8449-RA | 171..1228 | 9..1076 | 4965 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13271123..13271841 | 727..9 | 3595 | 100 | Minus |
| 3R | 32079331 | 3R | 13270969..13271065 | 824..728 | 485 | 100 | Minus |
| 3R | 32079331 | 3R | 13270767..13270911 | 971..823 | 455 | 93.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:44:24 has no hits.
FMO09355.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:25 Download gff for
FMO09355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8449-RA | 177..1247 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:58 Download gff for
FMO09355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8449-RA | 162..1232 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:18 Download gff for
FMO09355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8449-RA | 162..1232 | 1..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:18 Download gff for
FMO09355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13270767..13270909 | 825..971 | 95 | <- | Minus |
| 3R | 13270969..13271065 | 728..824 | 100 | <- | Minus |
| 3R | 13271123..13271845 | 1..727 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:58 Download gff for
FMO09355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9096489..9096631 | 825..971 | 95 | <- | Minus |
| arm_3R | 9096691..9096787 | 728..824 | 100 | <- | Minus |
| arm_3R | 9096845..9097567 | 1..727 | 99 | | Minus |
