FMO09356.5prime Sequence
1101 bp (985 high quality bases) assembled on 2010-10-13
> FMO09356.5prime
CAGTCGACATGGGCGACCTGCCGGGCTCGGGCTCCACCGCTCAACCACGG
GATGCTGCTGTCACCGGTACCGGTGGTAATTCCACGGCTGGTGGCGGCTC
CTCCGTTGGATCTACGGCAGTGGACCGACCTCCGTCGCCCGCCCGCCTCT
CTCACACGTCCGAGAAACATCCGAAGGTCACGCTCACTGAACTAAATATG
CTACGGCGCCATCGGGAGCTCTGCGATGTGGTGCTCAACGTGGGCGGACG
GAAGATCTTTGCCCACCGGGTAATCCTGTCCGCCTGCAGCTCCTACTTCT
GTGCCATGTTCACTGGCGAATTGGAGGAATCGCGCCAGACTGAGGTCACC
ATACGCGACATCGATGAGAATGCCATGGAGCTGCTCATCGACTTTTGTTA
CACCGCCCACATAATCGTCGAGGAGTCGAATGTCCAGACCCTCCTTCCCG
CCGCCTGCCTGCTTCAACTGGTTGAGATTCAGGACATCTGCTGCGAGTTC
CTCAAACGGCAATTGGATCCCACCAACTGCCTGGGCATACGCGCCTTTGC
CGACACACACTCCTGCCGGGAACTTCTACGGATCGCCGACAAATTCACGC
AGCACAACTTCCAGGAGGTGATGGAGAGCGAGGAGTTTCTGCTGCTCCCC
GTCGGCCAGCTGGTGGACATCATTTGCAGCGACGAGCTAAACGTGCGCTC
CGAGGAGCAGGTCTTCAACGCGGTCATGTCCTGGCTCAAGTACAATGTCG
CCGAGCGGCGACAACATCTGGCACAGGTGCTCCAACACGTCCGTCTGCCT
CTGCTGTCGCCAAAGTTCCTGGTTGGCACGGTGGGCTCTGATCTCCTGGT
GCGCAGCGACGAGGCCTGCCGGGATTTGGTGGATGAGGCTAGAACTATCT
GTTGCTTCCGCAGGAGCGACCGCTGATGCAGGGTCCACGCACCAGACCGC
GAAAGCCAACTCGAACGAGGCGAAGTCCTGTCGCCGGTGGGCGTTGGTGT
TCCGGCGATGCTATTGCTTCCGTGTACGTTCGATCCTCAAACCAACGACT
GTAAATGGTCGCTCCATGATCCAACGACGCCTGCGGAATGGCTTGCCGGT
A
FMO09356.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dbo-RB | 3186 | CG6224-RB | 267..1349 | 9..1087 | 5090 | 98.5 | Plus |
| dbo-RA | 3650 | CG6224-RA | 267..1349 | 9..1087 | 5090 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15828318..15829040 | 57..779 | 3615 | 100 | Plus |
| 3L | 28110227 | 3L | 15829183..15829478 | 774..1065 | 1070 | 94.6 | Plus |
| 3L | 28110227 | 3L | 15828003..15828051 | 9..57 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:44:28 has no hits.
FMO09356.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:25 Download gff for
FMO09356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbo-RA | 271..1357 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:01 Download gff for
FMO09356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbo-RA | 263..1349 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:20 Download gff for
FMO09356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbo-RA | 263..1349 | 1..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:20 Download gff for
FMO09356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15827999..15828051 | 1..57 | 92 | -> | Plus |
| 3L | 15828319..15829037 | 58..776 | 100 | -> | Plus |
| 3L | 15829186..15829500 | 777..1087 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:01 Download gff for
FMO09356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15821099..15821151 | 1..57 | 92 | -> | Plus |
| arm_3L | 15821419..15822137 | 58..776 | 100 | -> | Plus |
| arm_3L | 15822286..15822600 | 777..1087 | 94 | | Plus |
