FMO09357.5prime Sequence
1110 bp (969 high quality bases) assembled on 2010-10-13
> FMO09357.5prime
CAGTCGACATGACCAGGACGTGCAGAGTGTGTGGCTGCGACGACGGACGC
TACTGGATTGAAACGCCCGTGGAGAAGTACGCGGAGAAGACCTTCGTCCA
GCTGCTGGTCGAGCTAACGCGAATCGAGGTGGTCATGGCGCAAGCTGAGA
AGTTCCCACAGTGGCTGTGCTACGCGTGTGCCGAGAAGCTGGAGAGCACC
TACGATTTTGTGCTGCAGGCACGTCGAACACACGAGCTGTGGCTGCAGAA
AATCGGGGATTCTTTGAATGGGGATGACGAGATGGAGGGCACTGCGGCCT
TGGAATGCCTGCGTGAGACACCCATCCACCTGTTTGAGATTGAAGGCGTG
ACCATCAAGACGGAGGAACTGGCTTCAACGCAACAGGCGCCCAAGGCAGA
TCCTTTAGTGCGCCCGCGCATTGTCAAACGGAGTATTGTACTCTTTAGCG
ATTCCGATGAAGACCTGGATGATGTGCCTCTGCGTCAACGTAAGATAGCA
GCCTCGGTCTGCGGCTCTGACACGACGAAGGAAAATGTTTGCGAGCTGTG
CAACAAGGTCTTCAGATATGTCACCAATCTGTATCGTCACAAGCAGAGGG
ACCACGGAATTCTGGGCAAGAACGGAGAGGATTATGAAGAAGACTATTAC
AAGTGCGATCTGTGCGATAAAACCTACAAGTACGTGATGGCGCTGGTGAA
GCACAAACACAAAGAGCACGGATCCAGTCTCCTGTCGAATAATTCCGGGC
GAAAGATGCCGTCAACTTTGGCCGAGATGCCAATCCATACAGTCCAGCAT
CCATCTCTGAAACATCCACTAATCAAAGCAGACCCAACAACGACTCCCTG
GTACACAGCATCATCATGGCAGTGGTACTCTCCGATGAGGATGGCCACAG
TGTTGAAGTTAGCTACTACAATTGCGATCAGTGTAGTAAATCGTACAGTA
CATTGTCAGCTTGATCAAGCACCAGCACAAAGGAGCCACTTAGAACAATG
GGTTCATACAAGCAGTCGGATGACGAAAACGATCGGGCCTCTGGCTTCCC
CATCCGGCTCTCGGCAAGGTGCACCCAACTGTGCGAAACCTTCTAGGAAT
CAACTCGAAG
FMO09357.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10669-RB | 3310 | CG10669-RB | 97..1187 | 9..1110 | 4975 | 97.6 | Plus |
| CG10669-RA | 3008 | CG10669-RA | 97..1187 | 9..1110 | 4975 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25334441..25334952 | 638..127 | 2530 | 99.6 | Minus |
| 3R | 32079331 | 3R | 25334147..25334392 | 876..632 | 1150 | 98.8 | Minus |
| 3R | 32079331 | 3R | 25335024..25335147 | 132..9 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 25333794..25333973 | 1060..877 | 485 | 89.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:44:32 has no hits.
FMO09357.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:26 Download gff for
FMO09357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10669-RA | 132..1228 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:03 Download gff for
FMO09357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10669-RA | 91..1187 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:22 Download gff for
FMO09357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10669-RA | 91..1187 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:22 Download gff for
FMO09357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25334147..25334392 | 632..876 | 98 | <- | Minus |
| 3R | 25334448..25334950 | 129..631 | 99 | <- | Minus |
| 3R | 25335028..25335152 | 1..128 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:03 Download gff for
FMO09357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21159869..21160114 | 632..876 | 98 | <- | Minus |
| arm_3R | 21160170..21160672 | 129..631 | 99 | <- | Minus |
| arm_3R | 21160750..21160874 | 1..128 | 96 | | Minus |
