FMO09360.5prime Sequence
573 bp (408 high quality bases) assembled on 2010-10-13
> FMO09360.5prime
CAGTCGACATGCAGTCAATGAAAGCCGATGAACTGCCGGAGAATCCGCGC
GAGAAGTCCAACATCTTCTCATCTTTGATGTTCTGCTTTGCCATGCCCAC
TTTCTTCAAGGGACGCAAAAAGACACTGGATGAGAATGATTTGTACCGCG
CCTTACAGGAGCACAGATCAGATCACCTGGGCAGCAAGCTGAGCGCGGCG
TGGGAGAAGGAGGTCGAAAAGAAGCGCAAAAAGAAGAAGACCCCCAGCCT
GCTGAAGGCCTCGATGAACGTGTTTGGCTGGCGCCTGGCCGGTCTAGGCC
TGGTCCTCTTCATCTTGGAGATCGGTTTCCGAGTCACCCAGCCGCTGTTC
CTGGGCGGTCTGGTGGCCTACTATGCGGACGCGAGCAACCAGGAAGGCGA
TAACCAGACGAAGGATACCTCTACGCCCTGGGCGTGTCTTGACAACGCCT
GCAAGTGCTCTTCATGCTCCCTACATGCTGGGCTGTTCAGATCGGCTGAA
GGCAGAATAGCCTGACAGCATGTATATCGAAGCGTGCTTGAGTCGACGCG
TGGCATCCACATTGTCGTGTCAC
FMO09360.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4562-RE | 4825 | CG4562-RE | 146..678 | 9..529 | 2350 | 97.6 | Plus |
| CG4562-RD | 4764 | CG4562-RD | 388..920 | 9..529 | 2350 | 97.6 | Plus |
| CG4562-RC | 6512 | CG4562-RC | 371..903 | 9..529 | 2350 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19871842..19872004 | 331..169 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 19871613..19871770 | 483..331 | 540 | 96.8 | Minus |
| 3R | 32079331 | 3R | 19874201..19874287 | 171..85 | 435 | 100 | Minus |
| 3R | 32079331 | 3R | 19874345..19874421 | 85..9 | 385 | 100 | Minus |
| 3R | 32079331 | 3R | 11569757..11569802 | 8..53 | 185 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:44:09 has no hits.
FMO09360.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:22 Download gff for
FMO09360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4562-RB | 144..676 | 9..529 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:41:50 Download gff for
FMO09360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4562-RC | 371..903 | 9..529 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:12 Download gff for
FMO09360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4562-RC | 371..903 | 9..529 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:12 Download gff for
FMO09360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19871842..19872001 | 172..331 | 100 | <- | Minus |
| 3R | 19874201..19874286 | 86..171 | 100 | <- | Minus |
| 3R | 19874345..19874421 | 9..85 | 100 | | Minus |
| 3R | 19871574..19871769 | 332..517 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:41:50 Download gff for
FMO09360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15697564..15697723 | 172..331 | 100 | <- | Minus |
| arm_3R | 15699923..15700008 | 86..171 | 100 | <- | Minus |
| arm_3R | 15700067..15700143 | 9..85 | 100 | | Minus |
| arm_3R | 15697296..15697491 | 332..517 | 94 | <- | Minus |
