FMO09361.5prime Sequence
1086 bp (920 high quality bases) assembled on 2010-10-13
> FMO09361.5prime
CAGTCGACATGTCCGTGGACAACAGCTTGGGAATTCTAGACTTATCTTCG
GGTAAGGAGAGTGAGAAAACAGCAATGACAGCAGCAAACAAGGAGAACGA
TCCGGATTCCCATTTCACGGGTACTATCGTCACAACAGGCGCCACTGCTC
AGCCAGCCACGCCCACTACCTCAAATGCCACCGCCCTACCAGCCACGCCT
ACTGTGGCAGCTGGCCAGGATTTGGGTGACGGTGCATGTAGTAGTAAAAA
TACGGATTCCAAGTTTCAATCGTACGTAAATGGCAATGGCAATGGTGTGT
ACAAGATCATCAAGACACTCGGTAAGGGAAACTTTGCCAAGGTCAAGTTG
GCGATTCATGTGCCCACCGGTCGTGAAGTGGCCATCAAGGTGATCGATAA
GACGCAGCTCAATACGAGTGCACGTCAGAAGCTGTACCGCGAGGTGAAGA
TCATGAAACTGCTGAACCACCCGAACATCGTGCGCCTCTTCCAAGTCATC
GAGTCTGAGAGGACACTCTACCTGGTGATGGAGTACGCGAGTCGTGGCGA
GCTATTCGACCACCTGGTGAAGAACGGGAGGATGCGGGAGCGGGATGCCA
GGGTGATCTTCTGACAGTTGGTGTCCGCCATTCAGTACTGCCACAGCAAG
TTTGTGGTTCATCGGGATCTGAAGGCGGAGAACCTGTTGCTGGACCAGCA
CATGAACATTAAAATAGCGGACTTTGGCTTCGGCAATACCTTCGATCCCA
ACGCCCAGCTTGAAACGTTCTGCGGGAGTCCACCATATGCTGCCCTCTGA
ACTTTTCATGGGCAGGAAGTACGCCGGCCCGGTAGTGGACGCCTGGTCGC
TGGGAGTGGTGCTGTACACTCTCGTCAGCGGTTCGCTGCCCTTTGATGGA
GGCACCTTAAGGAGTTGCGGGGAAGAGTCCTGCGGGGTAAGTACCGTGGT
GCCCTACATCATCTCATGGACTGCGAAACCTAATGATGAAGTTCTTGGTC
TTGATTCCCGCCAGCGCACTTCGCTTTCTTGCCGTGGGATCCGATTATTG
GGATAAATCTTGGGCCACCAATGATTCCCACCGAAT
FMO09361.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KP78a-RB | 4988 | CG6715-RB | 637..1710 | 9..1084 | 4805 | 96.9 | Plus |
| KP78b-RB | 4988 | CG17216-RB | 637..1710 | 9..1084 | 4805 | 96.9 | Plus |
| KP78a-RB | 4988 | CG6715-RB | 3091..3729 | 261..900 | 1315 | 81 | Plus |
| KP78b-RB | 4988 | CG17216-RB | 3091..3729 | 261..900 | 1315 | 81 | Plus |
| KP78b-RA | 2066 | CG17216-RA | 233..871 | 261..900 | 1315 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11349623..11350645 | 1029..9 | 4630 | 98.1 | Minus |
| 3R | 32079331 | 3R | 11347553..11348191 | 900..261 | 1290 | 80.5 | Minus |
| X | 23542271 | X | 2059589..2059660 | 731..660 | 195 | 84.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:44:47 has no hits.
FMO09361.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:28 Download gff for
FMO09361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KP78a-RA | 1..1031 | 9..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:10 Download gff for
FMO09361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KP78b-RB | 637..1667 | 9..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:30 Download gff for
FMO09361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KP78b-RB | 637..1667 | 9..1040 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:30 Download gff for
FMO09361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11349588..11350645 | 9..1066 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:10 Download gff for
FMO09361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7175310..7176367 | 9..1066 | 97 | | Minus |
