FMO09362.5prime Sequence
1107 bp (947 high quality bases) assembled on 2010-10-13
> FMO09362.5prime
CAGTCGACATGAGTTTATTAGAGCCTCCTTGTCTAGTCCTGGAAAAGGCG
CTGCTTTTGGGAGCGTTGCTGCTGGCCGTCCTTGCCACACCACTTCTGGC
CACAAGCGGCTTACGGGTGCCCACATTCCTGCTGGAGCCCGCACCCCGGC
TGCTCTTCGGCAACGACACGGGTGCCCAGGTCACCTGCACCGCCCACGGC
AGCCCGCCGCCCCTCGTCACGTGGGTCCTTCGCGACGGATCGCTGGCCAC
CCAGGTGCCGGGCCTCAGGAAAATATCAGGCAACGGCACCCTGCACTTCC
CCCCATTCCTGGCCCAATATTATCGCACGGATGTTCACGAGGCCACCTAC
AGATGCCGGGCGAGCAACGAGGCGGGCACCGTCCTCAGTCGAAATGTTCA
GGTGCATGCAGTGGTGCGTCGTCAATTCCACGTGTACGTGGAAAACACTG
AAGTCTATTTGGGAAATTCGGCGTTGATTAAGTGCGCCATTCCGGAGTAT
GTGCGGCCCTATGTGCGCGTGGCCAGTTGGCATCGTGGCGAGGAGATACT
CCTGCCGGATCTGTCGGATGTCGCGGGACGCTATGTGGTCCTGGCCGCCT
CCGGGGATCTCTATGTGCGTTCCGTGCGTTCCGAGGACGGACTGATGAAG
TTCAGCTGCCTGGTGACAAATACACTGAACGGCGAGCGACAGCGCAGCGA
TGCGGTGATGCTGCAGGTCAAAGAGTTAAGCAAGAATCTGGCTCCTCGGA
CCACCCAGAAACCGGTGATGGAGATTCACGTGGAGCGTGAAACGACGTTC
ATCTGCCGTGCAACATCCAGGGCAACCCATTTCCCATATTTACCTGGTAT
CGCGTTTCCGACTCGGCAGCCCTCTATCCCATACCCTCGTCACAGCGAGT
GATACTTTCGCGCACACTGCTGCTCATCAAAAATGCTGACGAACGCGATG
GGGGCAAGTGGATTTGCCAGGCCTCGAATCAGTTTGGGGGAACAACCGCA
TCGAAGAATCCGACTTCATGTCAATTCGTATGTGGTCGGTGCATATAATT
TGCCGCCAGGTTTCAAAATTTGTCAATTCGGCCGAACGCCATATTTCAAT
TTGTACA
FMO09362.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dscam3-RD | 3712 | CG31190-RD | 459..1546 | 5..1101 | 4990 | 97.6 | Plus |
| Dscam3-RC | 8231 | CG31190-RC | 864..1951 | 5..1101 | 4990 | 97.6 | Plus |
| Dscam3-RF | 7745 | CG31190-RF | 459..1546 | 5..1101 | 4990 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17497354..17497575 | 269..48 | 1110 | 100 | Minus |
| 3R | 32079331 | 3R | 17492436..17492600 | 573..409 | 810 | 99.4 | Minus |
| 3R | 32079331 | 3R | 17492030..17492180 | 723..573 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 17494087..17494232 | 411..266 | 730 | 100 | Minus |
| 3R | 32079331 | 3R | 17490286..17490403 | 961..844 | 575 | 99.2 | Minus |
| 3R | 32079331 | 3R | 17491727..17491849 | 843..722 | 565 | 99.2 | Minus |
| 3R | 32079331 | 3R | 17498266..17498309 | 48..5 | 205 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:44:50 has no hits.
FMO09362.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:29 Download gff for
FMO09362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31190-RC | 861..1951 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:12 Download gff for
FMO09362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dscam3-RF | 456..1546 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:33 Download gff for
FMO09362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dscam3-RF | 456..1546 | 1..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:33 Download gff for
FMO09362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17490286..17490403 | 844..961 | 99 | <- | Minus |
| 3R | 17491727..17491847 | 724..843 | 99 | <- | Minus |
| 3R | 17492030..17492179 | 574..723 | 100 | <- | Minus |
| 3R | 17492436..17492597 | 412..573 | 99 | <- | Minus |
| 3R | 17494087..17494229 | 269..411 | 100 | <- | Minus |
| 3R | 17497355..17497574 | 49..268 | 100 | <- | Minus |
| 3R | 17498266..17498312 | 1..48 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:12 Download gff for
FMO09362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13316008..13316125 | 844..961 | 99 | <- | Minus |
| arm_3R | 13317449..13317569 | 724..843 | 99 | <- | Minus |
| arm_3R | 13317752..13317901 | 574..723 | 100 | <- | Minus |
| arm_3R | 13318158..13318319 | 412..573 | 99 | <- | Minus |
| arm_3R | 13319809..13319951 | 269..411 | 100 | <- | Minus |
| arm_3R | 13323077..13323296 | 49..268 | 100 | <- | Minus |
| arm_3R | 13323988..13324034 | 1..48 | 93 | | Minus |
