FMO09363.5prime Sequence
1081 bp (942 high quality bases) assembled on 2010-10-13
> FMO09363.5prime
CAGTCGACATGGACCAGAATGGCGCATCGGGAAGTCATCCGAACAGGCTA
TCCCAAGGAAGAGGAGCCCATGCGCGCGAACGTGGCGCCACAGTTTCCGC
GGCGGCAAATCGGAGTAACATTATCGACGAAATGGCCAAAATATGCGAAG
CCGATCGCCAGACTTTCGCCATCGCTCGACGGACTCGGGGTCACGAGCGG
CTTGCGGTGGACAACAGCGACTTCGTCGCCGTGGAGGATCTTATTTTGTC
CTACGCAGAGCCCACGCCCGAGGACCAGGTCGAGATGATCATGAGCGACT
TTTGCTCGTCTCCAACATACGCAGAGGATGAGGATGAGCCCAGCCATGAG
TCGGAGCCGTGGTTTCGATTTCGCAACAAAAGGATCAGAACCTACAGCCG
GAAGAGGGATCCCAAAAGCCACAAGGCCGTTCAAAACGAGAAGCGTAGAG
GTTCCTCAGGCCTCTCCGTGCAGAGGGATCTCAATACTTCGTTCACATCT
ATGGCTTGTGATTTCGATGCTTCATCACAGAAGATACACGAGGTCCTTTT
GAACCTCAGTCAATACTTTTCCGCGACCGCGACAGCTTCCGGTCCGACTC
CTGTCCCATCGCAAATAGATCTGCCAACCGAAGCAAGGCAGGATTCTGGT
GACGAGTGTTTCAACGCTGAATTGGAGAACTTGAGGGATGACCTGTTGCA
GAGCGGATTTACATTTGAGGCCTCTTTCTATGAAAATGAGCATGAGCAGG
AAGGTCCAGGAACTATGGCAGACACTATTTATGGCGATAGCATGCAATCG
GTTCCCACTACGCGCCTCCGATTGGAAAGTGGAAAACGTAATGTTTGGTC
TGATGCAGACTCTACATTGAAAAAAGCTGATGTCGAAATTGCTGAAAATA
AGAAACTTTTGATGGGGCCCAACGCAAGCAAAAAATGGTGACATATGAGG
AGGACACAAACCTCTAATTATAAGGCGTCCACCTAGTGGAATGGGCTACT
CTCATGGACCGCCCCGAGATCTCCCAGAAGGTATCCAACCTTAATCTCCA
ATAAAAGTTAAGTTGGGAGCCAGTTCCCTGC
FMO09363.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brca2-RA | 3291 | CG30169-RA | 130..1143 | 9..1024 | 4715 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24526301..24527047 | 9..755 | 3735 | 100 | Plus |
| 2R | 25286936 | 2R | 24527236..24527433 | 825..1024 | 570 | 88 | Plus |
| 2R | 25286936 | 2R | 24527104..24527177 | 752..825 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:44:55 has no hits.
FMO09363.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:29 Download gff for
FMO09363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30169-RA | 98..1037 | 1..945 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:14 Download gff for
FMO09363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brca2-RA | 126..1065 | 1..945 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:35 Download gff for
FMO09363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brca2-RA | 126..1065 | 1..945 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:35 Download gff for
FMO09363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24526297..24527045 | 1..753 | 99 | -> | Plus |
| 2R | 24527106..24527177 | 754..825 | 100 | -> | Plus |
| 2R | 24527237..24527355 | 826..945 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:14 Download gff for
FMO09363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20413820..20414568 | 1..753 | 99 | -> | Plus |
| arm_2R | 20414629..20414700 | 754..825 | 100 | -> | Plus |
| arm_2R | 20414760..20414878 | 826..945 | 97 | == | Plus |
