FMO09364.5prime Sequence
1094 bp (967 high quality bases) assembled on 2010-10-13
> FMO09364.5prime
CAGTCGACATGCTGGCCATAGTAATCCTGATGACTGGAGGTGTTGGGGTA
TGCATAAACCCCAATCGTTCTGACCAGAAAACTGCCTTCAAAGTGGTGGC
AACATCGGTGAAAGGTGGACGCTCGTACAGCAAGGACAGCCACAAGAGTT
CGCACACCGACTTGAGTTTAATGTGCAATGCCTCATCGTCCCGGCCATCG
AACTCTGCGTCTGGAAGCGGATCGCCGAAGCTATTGGCAAACACTCAATT
GCGAGCTGCCAAAAAGCGCGATGTGCGCAATCTGAGCATATCGCCAACCG
ATCTGGGTCCGCCACCAAAAACCCAACAGACAACCAAGGGACAATCGACG
CGCAGCAAATCATCGGCCACGCCCACGCCAACGCCCACATCCATACATAA
ACGTTTAAATGGCACTTTGGCCAGCACGGCAGCAATTGCAACACCCATCA
AAGGAGTGGCCACCAAATCCGGAGCCACAAACAAGCTGCAACAATCGGCA
AAAACTAAATCAACCGCGAGTATCAAAAGTCCAGCAATTGTCGGCGTTTC
CGAGGAATCCCTGCGCTCTGGCGTGGATCAAACCGAACTTCAGGAGCTGA
ACAATGGGCAATCTGCTACCGGTTGTCCGACGCCGCCGATGGCGCGGGAC
TCAAAGCGTACGTCCATTGGAAATGAGTTACCCTGTGAGACGGAGGTCAA
GTTGAAGAGATGCGAGGACCAGCAGGATCCACAAGCATCCACGACGGCAT
CACCCCTACCGATGATCAATCCACAGGAACAAGAAGCCAGTGGCCAGGTC
AAAGAAGCAACAATCACCACTGCAAATGAGCCAAACGCCTTGTCCTTGCC
CGACGAAATCAGCAATTCGGTCAGCTCGACGACGATGCTGGGCCACGCCC
CGCGTAGACATAGCCCGCCCAGTATCCCGTCCCTGAAACCATTCACAGAG
AACCGGAGAGCTGGACTGGTGCTCGACTGGCCTAGGTTCTTTCCAGGACC
ACCCAAGTTTGGAGAAGGATGGAGGGAGCAACGCCAGAATTCTTGGGTCC
CTCTCCGTTATAGTGTGCAGTTCTAGTTCCAAAGAACTGGAATG
FMO09364.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toc-RD | 3410 | CG9660-RD | 138..1201 | 9..1091 | 4815 | 97.4 | Plus |
| toc-RA | 8297 | CG9660-RA | 4080..5037 | 115..1091 | 4285 | 97.1 | Plus |
| toc-RH | 4787 | CG9660-RH | 708..1527 | 253..1091 | 3595 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3080994..3081269 | 830..555 | 1365 | 99.6 | Minus |
| 2L | 23513712 | 2L | 3094217..3094375 | 555..397 | 795 | 100 | Minus |
| 2L | 23513712 | 2L | 3097918..3098065 | 400..253 | 725 | 99.3 | Minus |
| 2L | 23513712 | 2L | 3108724..3108862 | 253..115 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 3112093..3112199 | 115..9 | 535 | 100 | Minus |
| 2L | 23513712 | 2L | 3080741..3080889 | 982..829 | 505 | 96.1 | Minus |
Blast to na_te.dros performed 2014-11-26 14:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Penelope | 4158 | Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). | 607..710 | 407..510 | 116 | 61.1 | Plus |
| Penelope | 804 | Penelope 804bp Derived from AF418572 (AF418572) (Rel. 70, Last updated, Version 3). | 162..265 | 407..510 | 116 | 61.1 | Plus |
FMO09364.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:30 Download gff for
FMO09364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toc-RD | 132..1093 | 1..968 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:16 Download gff for
FMO09364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toc-RD | 132..1093 | 1..968 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:37 Download gff for
FMO09364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toc-RD | 132..1093 | 1..968 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:37 Download gff for
FMO09364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3080754..3080887 | 831..968 | 97 | <- | Minus |
| 2L | 3097922..3098065 | 253..396 | 100 | <- | Minus |
| 2L | 3108725..3108861 | 116..252 | 100 | <- | Minus |
| 2L | 3112093..3112204 | 1..115 | 96 | | Minus |
| 2L | 3080994..3081268 | 556..830 | 99 | <- | Minus |
| 2L | 3094217..3094375 | 397..555 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:16 Download gff for
FMO09364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3097922..3098065 | 253..396 | 100 | <- | Minus |
| arm_2L | 3108725..3108861 | 116..252 | 100 | <- | Minus |
| arm_2L | 3112093..3112204 | 1..115 | 96 | | Minus |
| arm_2L | 3080754..3080887 | 831..968 | 97 | <- | Minus |
| arm_2L | 3080994..3081268 | 556..830 | 99 | <- | Minus |
| arm_2L | 3094217..3094375 | 397..555 | 100 | <- | Minus |
