FMO09366.5prime Sequence
1069 bp (931 high quality bases) assembled on 2010-10-13
> FMO09366.5prime
CAGTCGACATGTCGCCGAATCGATGGATCCTGCTGCTCATCTTCTACATA
TCCTACCTGATGTTCGGGGCGGCAATCTATTACCATATTGAGCACGGCGA
GGAGAAGATATCGCGCGCCGAACAGCGCAAGGCGCAAATTGCAATCAACG
AATATCTGCTGGAGGAGCTGGGCGACAAGAATACGACCACACAGGATGAG
ATTCTTCAACGGATCTCGGATTACTGTGACAAACCGGTTACATTGCCGCC
GACATATGATGATACGCCCTACACGTGGACCTTCTACCATGCCTTCTTCT
TCGCCTTCACCGTTTGCTCCACGGTGGGATATGGCAATATATCGCCAACC
ACCTTCGCCGGACGGATGATCATGATCGCGTATTCGGTGATTGGCATCCC
CGTCAATGGTATCCTCTTTGCCGGCCTCGGCGAATACTTTGGACGTACGT
TTGAAGCGATCTACAGACGCTACAAAAAGTACAAGATGTCCACGGATATG
CACTATGTTCCGCCGCAGCTGGGATTGATCACCACGGTGGTGATTGCCCT
GATTCCGGGAATAGCTCTCTTCCTGCTGCTGCCCTCGTGGGTGTTCACCT
ACTTCGAGAACTGGCCCTATTCCATCTCGCTGTACTACAGCTATGTGACC
ACCACAACAATTGGATTCGGTGACTATGTGCCCACATTTGGAGCCAACCA
GCCCAAGGAGTTCGGCGGCTGGTTCGTGGTCTATCAGATCTTTGTGATCG
TGTGGTTCATCTTCTCGCTGGGATATCTTGTGATGATCATGACATTTATC
ACTCGGGGCCTCCAGAGCAAGAAGCTGGCATACCTGGAGCAGCAGTTGTC
CTCCAACCTGAATGCCACACAGAATCGCATCTGGTCTGGCGTCACTAGGA
TGTGGGCTACCTCCTGCGAATGCTCAACGAGCTGTACATCCTCAAAGTGA
AGCCTGGTGTACACCGATGTAAATATCGCTAACCCACTGGCACGTTCAAT
TCGTGTCGGAATCTGAGCATGTACCGCGTGTGGAATCCGGCTCCCATTTC
CAAGCGGAGAAAGGCAATT
FMO09366.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ork1-RD | 4409 | CG1615-RD | 935..1983 | 3..1052 | 4920 | 98.2 | Plus |
| Ork1-RA | 4100 | CG1615-RA | 626..1674 | 3..1052 | 4920 | 98.2 | Plus |
| Ork1-RB | 3979 | CG1615-RB | 505..1553 | 3..1052 | 4920 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10882233..10882532 | 449..150 | 1500 | 100 | Minus |
| X | 23542271 | X | 10881915..10882167 | 701..449 | 1265 | 100 | Minus |
| X | 23542271 | X | 10885994..10886136 | 150..8 | 715 | 100 | Minus |
| X | 23542271 | X | 10881475..10881623 | 952..805 | 650 | 97.3 | Minus |
| X | 23542271 | X | 10881739..10881845 | 806..700 | 535 | 100 | Minus |
| X | 23542271 | X | 10880499..10880573 | 1030..957 | 220 | 89.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:45:07 has no hits.
FMO09366.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:31 Download gff for
FMO09366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ork1-RA | 180..1241 | 1..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:21 Download gff for
FMO09366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ork1-RB | 503..1564 | 1..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:41 Download gff for
FMO09366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ork1-RB | 503..1564 | 1..1064 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:41 Download gff for
FMO09366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10881915..10882166 | 450..701 | 100 | <- | Minus |
| X | 10881475..10881622 | 806..952 | 97 | <- | Minus |
| X | 10881740..10881843 | 702..805 | 100 | <- | Minus |
| X | 10882233..10882531 | 151..449 | 100 | <- | Minus |
| X | 10885994..10886143 | 1..150 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:21 Download gff for
FMO09366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10775508..10775655 | 806..952 | 97 | <- | Minus |
| arm_X | 10775773..10775876 | 702..805 | 100 | <- | Minus |
| arm_X | 10775948..10776199 | 450..701 | 100 | <- | Minus |
| arm_X | 10776266..10776564 | 151..449 | 100 | <- | Minus |
| arm_X | 10780027..10780176 | 1..150 | 98 | | Minus |
