FMO09367.5prime Sequence
1094 bp (979 high quality bases) assembled on 2010-10-13
> FMO09367.5prime
CAGTCGACATGGTGCAAAAATTCCAGTCACCCGTTCGCGTCTACAAATAT
CCTTTTGAGCTGGTGATGAAGGCCTATGAGCGGCGGTTTCCCACATGCCC
GCAGATGCCCATCGTCCTGGACTGTGAGGTCATTAAGGACGAGTCCCTGG
AGGACGGGGCCAAGCGAAACACGAGCCGACGCTGCAAGCTGGCGGTCGAC
GCGCCGTACATCTTCAAAAAGCTTATTGGCGTGGACCATGTGTACTTCCT
GCAGCACAACTTCCTGGACCTGGCCAACCGCACGCTGAGCATCGAGGCGG
TCAACGAGAGCTTCTCGTCGCGCATCGAAATCTTCGAGCGGTGTCGCTAC
TACGCCCATCCGGACAACTCCGAATGGACGTGCTTTGACCAGTCGGCCAC
GCTGGACATTAAGAACTTCTTCGGCTTCGAGCACTCTATGGAAAAGATGG
GCATGAAGCAGTACACCCAGACGACGCTGAAGGGCAAAGAAATCATTGAG
TTCTTTATCGGGCAGCTGCGCGAGGAAGGCATCACGCATGTGGAGCGTTG
GACATCGCCCAGTGATGCAACCAAATCGCCAACCCTCGATCAGGCTTCGG
ATCAGCAGCATAGCATCTTGCTGGACGGCGACTTTATCGCACGCAGCCTG
GGCCAGCTGTCGCCCATGCAGGAGTCCAAGCTGCTGGAGCTGCGAAAAAT
GCTGGATGGTGTCGATGACTTGGAGCGTGTGCCCAGTTATCAGACCATCC
TGCGTTTCTTAGCAGCCAGGGACTGGCACGTTAGCCAGGCCTACGCCATG
CTCTGCGACTCGCTTCGCTGGCGTCGGGAACATCGCATCGACGCACTGTT
GGCGGAGTACTCCAAGCCAGCCGTGGTAGTGGAACACTTTCCCGGGCGGC
TGGCATCATTTGGACAAGGACGGTCGACCCGTTTACATTCTGCGCCTGGG
AAACATGGACGTCAAGGGCCTGCTTAAGTCAACTGGGAATGGATGGACTA
CTGCGATTGCTTTGCACATCCTGCGAGAGGCATTCGAAGTATCATGAATC
CGCGACGCCTGGAGAAGCCAGTCTCACTTGTCACTGCCTTGTCG
FMO09367.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| retm-RB | 3358 | CG9528-RB | 333..1422 | 9..1094 | 5075 | 98.4 | Plus |
| retm-RC | 3700 | CG9528-RC | 333..1422 | 9..1094 | 5075 | 98.4 | Plus |
| retm-RA | 3358 | CG9528-RA | 333..1422 | 9..1094 | 5075 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6452122..6453059 | 1009..70 | 4555 | 99.5 | Minus |
| 2L | 23513712 | 2L | 6455534..6455597 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:45:11 has no hits.
FMO09367.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:32 Download gff for
FMO09367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| retm-RA | 331..1427 | 1..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:23 Download gff for
FMO09367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| retm-RA | 326..1422 | 1..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:43 Download gff for
FMO09367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| retm-RA | 326..1422 | 1..1094 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:43 Download gff for
FMO09367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6452122..6453057 | 72..1009 | 99 | <- | Minus |
| 2L | 6455535..6455604 | 1..71 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:23 Download gff for
FMO09367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6452122..6453057 | 72..1009 | 99 | <- | Minus |
| arm_2L | 6455535..6455604 | 1..71 | 95 | | Minus |
