FMO09370.5prime Sequence
1090 bp (971 high quality bases) assembled on 2010-10-13
> FMO09370.5prime
CAGTCGACATGGTAGAAGGTGATTCCGCAAAGGGCAAAAGCGAATTCTAT
AATGTAGAAGCTGGACTACAACCGAACTACAACCAGAGCGCAGCAAGCAA
CCAAGCAAGCAACCATCCCACTGGCCAGGCCAACGCACCAGCCACCGGAA
ACGCGACTTCGCACATCGACAACCGAGCGATCATCCAGCCGTACTCCTTG
GGCACCGGACCCAAGCAGCCGGAGTATCAATTTGCGGCGGACAATCGCGG
CTACGAGCCGGACAGCCATGCCAATGGCAAGCAGCAGGACGTAGAGCGGG
ACGCCCCCGATGGGGGTCACGGGGGTCACGGGCCGCCCGGCAAGGGGGGC
AAGGGTGGTAAGGGACGCAAGAAGTCCGTACCCTTGCCGGAACCCACTGC
CCCAATAGTCGCCAATTTCGAGAGGGCCATCGAATTGTGCGGCTATGGCA
AGTTCCATTATATACTGCTGGCCATCTGCGGATTGGTCAGCACGTCCGAG
GAAATGGATGTCATATCCATGTCCTTCATTCTGCCATCGGCGGAGTGTGA
CCTGGATTTGAATACGGAGACCAAGGGCTGGCTGAACTCGATCATCTTCA
TCGGCATGATGGTGGGCGCTTACTTCTGGGGCAGCATCGCCGATAGCTTT
GGCCGCAAGAAGGTCCTCATCGTCATCTCGTTCATGAACGCCTTCTGCAT
CGTTGCGTCGTCCTTCTCGCAGACATACTCGTTCTTCATGCTGTTCCGCT
TCCTCAATGGTGCAGCTTTGGGCGGCAGTGGTCCTGTGATCTGGTCGTAC
TTCGCCGAATTCCAGCCCAAGGCGAAGCGCGGCTCCATGCTGAGCTTCAT
GGCCGCCTTCTGGACGTTTGGCAATCTGTTCGTGGCCAGCTTGGTCTGGC
TGATCATCCCGCGAACGATTGGCTTCACCACGCCGTACTTTACATACAAC
TCGTGGCGTATCTTTCTGCTGGTCTGCTCACTGCCCTCCGTTCCTCGGTG
GGGATTCCTCTTCTTCTTTCTGCCGGATCGCCCAAGGTTTCTGGCTGACC
GCTCGCAGGAGATTGGCCTCTTGTCATTTGTGCATTTCGT
FMO09370.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3168-RG | 3762 | CG3168-RG | 316..1352 | 9..1049 | 4970 | 98.8 | Plus |
| CG3168-RF | 3743 | CG3168-RF | 768..1804 | 9..1049 | 4970 | 98.8 | Plus |
| CG3168-RE | 3375 | CG3168-RE | 400..1436 | 9..1049 | 4970 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6723380..6724100 | 766..46 | 3605 | 100 | Minus |
| X | 23542271 | X | 6722438..6722692 | 1024..767 | 1085 | 96.5 | Minus |
| X | 23542271 | X | 6724209..6724245 | 45..9 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:44:36 has no hits.
FMO09370.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:26 Download gff for
FMO09370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3168-RB | 257..1305 | 1..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:05 Download gff for
FMO09370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3168-RE | 393..1441 | 1..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:23 Download gff for
FMO09370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3168-RE | 393..1441 | 1..1055 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:23 Download gff for
FMO09370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6722452..6722692 | 767..1010 | 97 | <- | Minus |
| X | 6723380..6724100 | 46..766 | 100 | <- | Minus |
| X | 6724209..6724250 | 1..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:05 Download gff for
FMO09370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6616485..6616725 | 767..1010 | 97 | <- | Minus |
| arm_X | 6617413..6618133 | 46..766 | 100 | <- | Minus |
| arm_X | 6618242..6618283 | 1..45 | 91 | | Minus |
