FMO09372.5prime Sequence
1107 bp (974 high quality bases) assembled on 2010-10-13
> FMO09372.5prime
CAGTCGACATGGTCAGAAAGCAAGTTGGAATCGAAAACAGTGCATCCTTA
GCAGTAAGCAAGCAGCAGGATCAAAAGGAGCAGGACTATAAGCCAGAGGA
TCAAAAGCAACAGCACATCGACATCGACTTGACGCCCGATCCGGCCAGCA
ACTTCAACTTCGCCCAGCAGGCGCAGGCCAACTACTCCGCCCGCACGCTA
GCCGCCAGCTATGAGCACGGCCAAAATCTCGGCCTGCAACATGCCCATCT
TGCCACCAGCAGCACTACCAACACGCCCTTGGCCTATGATCTGCACGAGG
TCGCCAGCTCCGGCTCCATCCTGCCCACCGAGATCCCCATCGAGGACGAG
GAGCGGCTGGAGCGCATCTTCAACAAGCTGGACCGCGATGGCGACGGCAG
GATCGATATCCACGACCTGTCAGCGGCACTGCACGAGTTCGGGTTGTCGA
GCGTTTACGCGGAGAAATTCCTTCAGCAGTCGGACAAGGATCAGAGCGGC
AACGTGGGCTTCGCCGAGTTCCTGCACTACGTGCGGGAGCATGAGAAGAA
CCTGGTCCTGCAGTTCTCGCACCTAGATAAAAATCGCGATGGCAAAGTGG
ACTTGGAGGAGCTGATATCGGCGTTCAAGGACCTGGGCCTGGACATTGAC
ATGGACGAGGCCAGAAATCTGCTCACCAGAATGGACAAGGATGGCAGCCT
GAACATTAGCTTTAACGAGTGGCGGGACTTCATGCTCTTGGCGCCCTCAA
CGGACATTCATGACTTGATTAAATTTTGGCGGCACTCTACTTACCTCGAC
ATTGGCGAGGATATGAACGTACCTGATGACTTCACACAGAAAGAGATGCA
GACTGGCCTCTGGTGGCGACACTTGGTGGCCGGTGGCATAGCTGGAGCAG
TTTCTCGGACGTGCACAGCGCCTCTGGACAGGATTATAGTGTACTTGCAG
TACAAACACCAAAGAATGGGAATCTCAGGTGTATGCACATCATGCTGACG
AGGCGGATCGCGTACCATGTGGCGAGGCAATGGCATTCATGTGGTTGAAG
ATTGCCCCGAACGGCTTTCAAGTTCCGCTGCCTACGAACAGAATGAAAGC
GACCTGA
FMO09372.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32103-RE | 3836 | CG32103-RE | 325..1420 | 9..1103 | 5140 | 98.5 | Plus |
| CG32103-RB | 2622 | CG32103-RB | 321..1416 | 9..1103 | 5140 | 98.5 | Plus |
| CG32103-RD | 1603 | CG32103-RD | 85..397 | 792..1103 | 1225 | 94.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12413448..12413903 | 464..9 | 2280 | 100 | Minus |
| 3L | 28110227 | 3L | 12405002..12405160 | 950..792 | 765 | 98.7 | Minus |
| 3L | 28110227 | 3L | 12412329..12412458 | 592..463 | 650 | 100 | Minus |
| 3L | 28110227 | 3L | 12412011..12412125 | 791..677 | 575 | 100 | Minus |
| 3L | 28110227 | 3L | 12412185..12412273 | 679..591 | 445 | 100 | Minus |
| 3L | 28110227 | 3L | 12404792..12404927 | 1092..960 | 300 | 91.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:44:43 has no hits.
FMO09372.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:27 Download gff for
FMO09372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32103-RA | 387..1486 | 6..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:08 Download gff for
FMO09372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32103-RB | 319..1418 | 6..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:28 Download gff for
FMO09372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32103-RB | 319..1418 | 6..1106 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:28 Download gff for
FMO09372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12412330..12412456 | 465..591 | 100 | <- | Minus |
| 3L | 12412011..12412122 | 680..791 | 100 | <- | Minus |
| 3L | 12412185..12412272 | 592..679 | 100 | <- | Minus |
| 3L | 12405002..12405160 | 792..950 | 98 | <- | Minus |
| 3L | 12413448..12413905 | 6..464 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:08 Download gff for
FMO09372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12398102..12398260 | 792..950 | 98 | <- | Minus |
| arm_3L | 12405111..12405222 | 680..791 | 100 | <- | Minus |
| arm_3L | 12405285..12405372 | 592..679 | 100 | <- | Minus |
| arm_3L | 12405430..12405556 | 465..591 | 100 | <- | Minus |
| arm_3L | 12406548..12407005 | 6..464 | 99 | | Minus |
