FMO09374.5prime Sequence
1092 bp (942 high quality bases) assembled on 2010-10-13
> FMO09374.5prime
CAGTCGACATGCATGCAGAACTCAGCGAAATGGAGTTGCGCATAGTGGCG
CGACTAAACGAGGAGATCGGAAAGGATGCCAGCCAGCTACACCGGGCCAG
CCACCTCGTTAGCCACTACAAAAAGCACCTCCAAGTTTTGTCCCAAACGC
TCGACTACGAGGATCCCCAGAACGTGTCCTGCTACAAAACCGCCTTCCAA
TGCCAGCAACAGGTTTGCGAGAGCATCGACTTCGAGCTGGAAAAGCTGGC
TCACTTCGAGGACAAGCTGAAAAGAAAGCTAAAGGAGTGCCAGCCCGTGC
TTGAGGGAGTGGCAGAGGATTTAGACAAGGTGCGACAACTGCAGCGTTTG
CAACAGTATCTGCTCCTGGTGCAGGACATTCAGGAGATAAGCGCTGCCCT
AGGCAATGCCATCAATGGCAAGGACGAGGACAAACTGGTTAATATCTACC
TAACCCTCTACGAGGGCAACGACTGCGAGCACAGCGTAATGGGTCGCCTG
CATGCTGTGCAGGCACAGTCGCTGAAATCCTTTGCCGAACGCACTGCCAT
CTACTGGCACAAGCTGCTCCTCAAGCGCCTGTCCAGCGCATTCGAGGCTG
TACTGAAGAGCATGCGCTGGGCGCATCTAGAACAGCAGGACCTTAACTAT
TCGTCCGCACGAGACACTGCCAAGGCGCAACTGCTAGCGGAGTACATGTT
CCTCATCAAATCTCCAGCCGAAGAGCGGGCGCCACTGCAAAGCATCACGC
CCAGCATCGTGTGCCAGCCCATCAACCGGGTGGTGCAGCTCCTATTGGCG
CCGTATCGCCAGCGTTTCCAATTTCACTTCACAGGCACCAGACAAACCAA
TAGATTAGACAAGCCCGAGTGGTTCTATACGCAAATTCTCAACTGGGGCA
AGAGACGCATTTGCTTTGTAGCAAAACATTTCAGCCAGCTGCCATTAAAG
CGGGTAGCTGGACTACAATCTCAGCTGGAGTTTATTCAAGGACTGGTGCG
TTATCCATTGAAAGTTGGCGTGGAATTAAAACAGATTTCCCAGAACAGAT
ACTATTTGTCCATCTACTTGATTGAAAGCCTTGGCCTCGAAT
FMO09374.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rint1-RA | 2394 | CG8605-RA | 106..1180 | 5..1072 | 4990 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7323923..7324750 | 149..974 | 3920 | 98.8 | Plus |
| 2R | 25286936 | 2R | 1806868..1807354 | 751..263 | 2155 | 96.5 | Minus |
| 3L | 28110227 | 3L | 7323724..7323868 | 5..149 | 710 | 99.3 | Plus |
| 3L | 28110227 | 3L | 7324808..7324911 | 973..1072 | 200 | 88.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:45:27 has no hits.
FMO09374.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:34 Download gff for
FMO09374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8605-RA | 93..1183 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:32 Download gff for
FMO09374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8605-RA | 103..1193 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:51 Download gff for
FMO09374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rint1-RA | 103..1193 | 1..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:51 Download gff for
FMO09374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7323721..7323868 | 1..149 | 97 | -> | Plus |
| 3L | 7323924..7324751 | 150..974 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:32 Download gff for
FMO09374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7316821..7316968 | 1..149 | 97 | -> | Plus |
| arm_3L | 7317024..7317851 | 150..974 | 99 | -> | Plus |
