FMO09376.5prime Sequence
1102 bp (958 high quality bases) assembled on 2010-10-13
> FMO09376.5prime
CAGTCGACATGATTAGTGAACGCCACAAGAGCCGCGATTTGGTTACGATA
CTTGGCCTGTTCCACCTCCTGCTCCTCGGATTCGCCTACGGCGACCATGT
GGTCGAGGTCTTGGCTCAATCAACAACCGCATCCACATCACAGCCGCAGA
CTTTGGAGACGATTGGCAGCCAGGATGGGGCTGCTCTGACGCCCGGTGCG
ACAACAGCTCCACGACTGGACCCGAACAACAACAACGAGTGGCGTCCTCT
TGGCCACGGGGATCCACTGCAAAAGGATCCCACCTACGACTACAGTCCGC
CGGCCTTGGATCGAGTACGCTACTGGGCGGAGAACAACAGCACTGGTCAA
AGTAATCCAGAGGCCAGGAAAAAGGAACTACCACCAGAGGTTCTTCGCAA
TAAAACGAAAAGTGAGGTACTGCTCCTTGGTGTGGCAAGTGATCGCGTTA
GGGTACCCCACTCCCATTCGTATCCACCAGTTGGTGGCTTAGGCCATTAT
CAGCAGCACCACCAGCAGCAGCAACAGCAGCAGCACCAGCAACAAGCTAA
ATATGCGGCCATCCGGAGGAGCTACTATGCTCCCACCCAGCAACAACATA
ACCCACAAATGCCACAGCATACACATGCCCAGCAGCACATGCCGCCTACC
CATTTGATGCCACCACCCATGATGATGATGAAATCAAGTGGTTCGTCCGT
TCCTCCCATGGAATACAGGCACAGTATGATGGCCACGGGAGCGCCCACCT
CTTACATGAGCCTCAACCATATGAGCTCTCCAACTACCAAACAAGCGATG
ACTTCCTCAGTGATTTACCATCAGCCACCAGCGATGAGCCACCACACCTC
ATTATCTTCTTCAACGCCTTGGATGACCAGTAGCCACCATATCGTTTATC
GTACTTAGATCCCCATCTGCAAGAATCCGTGCATACATACAGCTTTTCAA
GGCCCCATCACCAGTGAAACGATGATCTTACTCGCCCATCTCTCTTTCCA
AGGACATCAAATGGATCAAAGAACCGGGTCTTAAGAAGGCCGTGCTTCAT
GGAGCTACTCCAAAATGAGGGGTGGGGGTAACGCTGAGGCCAAGTTTAAG
CC
FMO09376.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13272-RB | 3251 | CG13272-RB | 447..1534 | 9..1102 | 4960 | 97.4 | Plus |
| CG13272-RA | 3336 | CG13272-RA | 532..1619 | 9..1102 | 4960 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16813460..16814321 | 204..1070 | 3770 | 97.5 | Plus |
| 2L | 23513712 | 2L | 16811665..16811863 | 9..207 | 995 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:45:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2500 | 495..675 | 220 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2546 | 495..652 | 205 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6882 | 495..637 | 200 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2433 | 499..621 | 199 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6918 | 495..625 | 196 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2484 | 495..636 | 176 | 60.8 | Plus |
FMO09376.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:34 Download gff for
FMO09376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13272-RA | 520..1597 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:33 Download gff for
FMO09376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13272-RA | 522..1599 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:52 Download gff for
FMO09376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13272-RA | 522..1599 | 1..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:52 Download gff for
FMO09376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16813464..16814332 | 208..1083 | 97 | | Plus |
| 2L | 16811655..16811863 | 1..207 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:33 Download gff for
FMO09376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16811655..16811863 | 1..207 | 98 | -> | Plus |
| arm_2L | 16813464..16814332 | 208..1083 | 97 | | Plus |
