FMO09377.5prime Sequence
1116 bp (949 high quality bases) assembled on 2010-10-13
> FMO09377.5prime
CAGTCGACATGAGCACCTGGAATCCGGAGAACGATGTGGACCTGCTGTCT
GGGTCCGAGGACGAGGAGGATGTGTCCATGAAGCGGGACTACCATGGGCG
CGAGGCCATTCTGTTCGTGGTAGACGCCAATCTTCAGACAGCCGGCGTGG
AGCGCCTGTTGGAGGCACTGAACATCATCCGGACGGCCTTTATATCCGGA
CTTCTGGTTAACGACAAGGACCTCATCGGACTCATCTTCGCCAACACCAA
GCACAGTCCGCCGCCGCTGGAAGCCAGTGCATTGGACAACATCGTAATGC
CGGATAACTGCGCAGTGTTCTTGCCCCTTCGCCAACTAACCAAACCCATT
GTGGAGCACTATCTGGAATTCATGGGCGGGGTGGAGACGCAGTTCGCCGA
TGTGTATGGCCTGGCGGAACCCGATGGTCGCGGTTTTTTTGACCTTATGA
TCCGGCTCTGCATCGAGATGCTGGAAAAGTGCGGCAAGAAGCTAAACAAC
GCCAAGATCGCCTATGTCACGGACGTCAGGGAACCTCATCCATCGAACAG
CAATCACTTCCAGGCTGCCCTGCAAAAGGCCAGCGATCTGGAGGGCAAGG
AGTTCGAGTTTCATGTCATTCCCATGGTCGATGACTTTGACTACGAGCCG
TTTTACAAGGAGTTCATCACGTTGTCAAGAGCTATCGAACTGGACGCCTT
CCAGGTGCCAGATGCCCAGATGCTGCGCGAAATCCTGTCCGATCGTAAGT
TGAAGCAGGATTTCCTTCGCCGATGCCTGGGCCACTTCAGTTTTTATCTG
GGCCCCAACCTATCCATGTCCGTACAGTACTACAATTACTTTCAGCGACG
CGCCTATCCGCGCAAAGTGCAAATCCTGCGCAGGACACAGTGTGGTGCGT
ACTAAGCGAGTGATTACGGTGCAAAACAAAAGGACGATGGCTCGCAGGAT
ATTCGAGCTACGAGTATCAGATTTAAGTGGACGGGCCGGTTGGTACATTT
GCCAACGGTGGGGCGAAAGTAATCTGGCGCATCAGCATTGGATCAGTTGA
CAGGGTGCGCTATCCTGCACACGGCCGCAAATAGTGTGCTGGCTGGCTTT
CAGGCATTCGAATTCC
FMO09377.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irbp-RA | 2149 | CG5247-RA | 92..1158 | 9..1082 | 4850 | 97.6 | Plus |
| Irbp-RB | 2048 | CG5247-RB | 92..827 | 9..744 | 3620 | 99.5 | Plus |
| Irbp-RB | 2048 | CG5247-RB | 828..1057 | 846..1082 | 725 | 90.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11410138..11410810 | 9..681 | 3305 | 99.4 | Plus |
| 3R | 32079331 | 3R | 11411054..11411348 | 680..973 | 1240 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:45:36 has no hits.
FMO09377.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:35 Download gff for
FMO09377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irbp-RA | 86..1055 | 1..973 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:35 Download gff for
FMO09377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irbp-RA | 88..1057 | 1..973 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:54 Download gff for
FMO09377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irbp-RA | 88..1057 | 1..973 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:54 Download gff for
FMO09377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11410134..11410810 | 1..681 | 98 | -> | Plus |
| 3R | 11411056..11411348 | 682..973 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:35 Download gff for
FMO09377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7236778..7237070 | 682..973 | 98 | == | Plus |
| arm_3R | 7235856..7236532 | 1..681 | 98 | -> | Plus |
