FMO09380.5prime Sequence
1181 bp (1015 high quality bases) assembled on 2010-10-13
> FMO09380.5prime
CAGTCGACATGGATGTGGAAGAGTTTCGCAAATACGGCAAGGAAGTGATT
GATTATATATGCCAATACGGCACTAATATAGAGGAGCGTGACGTGGCGCC
CACCTTGGATCCGGGTTACCTCAAAAAACTGCTACCAGCCGACGCTCCCC
AGTCGCCGGAGCCGTTCAAGGACGTGCTCGAGGACTTCGAGCAGAAGATC
ATGCCGGGCGTGGTGCACTGGAACCACCCCAAGTTCTTCGCCTACTTCCC
CTCGGGCAACTCTTTTCCATCGGTCCTAGGCGACATGCTCAGCAGTGCCA
TTGGTTCAATTGGCTTCAGCTGGGCCAGCTGTCCGGCGGCTGCCGAGCTG
GAGACGATCGTGATGAACTGGTACGCCAAGGCCCTTGGCCTGCCCAAGGC
CTTTGTTTCGGATGCCCCAGGCAGTACAGGCTTTTTTCGTCCTTCAGGGA
TCCGCCTCAGAGTGCGTTCTCGTCTCTCTAATCACAGCCCGCGCCCGGGC
CATCAGCGAGCTAAAGGGTCAGACCAGCGTTCACGACAGCGTCTTCCTGC
CCAGCCTGATCGCATACGCCAGCCGTGAGGCACACTCCTCCGTGGAAAAG
GCCACCAAGATGGCCCTGGTGAAGCTCCGGATAATCGATGCCGACGAGCA
TGGACGCATGCGCGTTGACCTACTCCGCCAAGCAATTCAAAACGATGTGA
ACGCCGGCTTGACACCCTTCTTTGTAGTGGCCACTGTGGGTACCACCGGC
GGCTGCGCTTTCGACGACATCACGGAGATCGGAAAGGTGTGCCGCCAGGT
GTCGAGCATTTGGCTGCACGTAGACGGCGCCTATGCGGGAAACTCCTTCA
TTCTGCCCGAGATGCGGGTCTTTTCGGCAGGACTCGAATACGCCGACTCC
TTCAACACAAATCCCAACAAGCTTCTGCTGACGAACTTCGATGCCTCTGC
CCTGTGGGGTGCGGGATGGTGATGAACCTTAAGAGCCGCGCTCAACGTGA
ATCCCCCTCCTACCTATCGAACACGAGCACTTGGACCGGGAGTTGACTAC
TGCCACTACGGCATTCCCTGAATCGCCGGATTCTGGGCACCCAGCCTGTG
GTCGTCTCCGGGACATACGGCAATTCGGGGCCTACAGGAATTACATTCGA
AATCTATATGGGCGGTGGGCTTAAAAAGATT
FMO09380.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tdc1-RA | 2281 | CG30445-RA | 213..1353 | 9..1161 | 5165 | 97.4 | Plus |
| Tdc2-RA | 2303 | CG30446-RA | 965..1121 | 809..966 | 240 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6678057..6679065 | 1154..135 | 4180 | 96.7 | Minus |
| 2R | 25286936 | 2R | 6680050..6680179 | 138..9 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 6687275..6687349 | 958..884 | 195 | 84 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:45:45 has no hits.
FMO09380.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:36 Download gff for
FMO09380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc1-RA | 201..1358 | 2..1174 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:39 Download gff for
FMO09380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc1-RA | 206..1363 | 2..1174 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:57 Download gff for
FMO09380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc1-RA | 206..1363 | 2..1174 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:57 Download gff for
FMO09380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6678050..6679061 | 139..1162 | 96 | <- | Minus |
| 2R | 6680050..6680184 | 2..138 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:39 Download gff for
FMO09380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2565555..2566566 | 139..1162 | 96 | <- | Minus |
| arm_2R | 2567555..2567689 | 2..138 | 97 | | Minus |
